Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25625

Experiment: R2A with Chloride 300 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS25615 and RR42_RS25620 are separated by 6 nucleotidesRR42_RS25620 and RR42_RS25625 are separated by 80 nucleotidesRR42_RS25625 and RR42_RS25630 are separated by 161 nucleotides RR42_RS25615: RR42_RS25615 - TetR family transcriptional regulator, at 1,090,802 to 1,091,383 _RS25615 RR42_RS25620: RR42_RS25620 - hypothetical protein, at 1,091,390 to 1,091,926 _RS25620 RR42_RS25625: RR42_RS25625 - LysR family transcriptional regulator, at 1,092,007 to 1,092,963 _RS25625 RR42_RS25630: RR42_RS25630 - transporter, at 1,093,125 to 1,094,438 _RS25630 Position (kb) 1092 1093Strain fitness (log2 ratio) -1 0 1at 1091.055 kb on - strand, within RR42_RS25615at 1091.100 kb on + strand, within RR42_RS25615at 1091.212 kb on + strand, within RR42_RS25615at 1091.381 kb on + strandat 1091.382 kb on - strandat 1091.382 kb on - strandat 1091.685 kb on + strand, within RR42_RS25620at 1091.685 kb on + strand, within RR42_RS25620at 1091.685 kb on + strand, within RR42_RS25620at 1091.685 kb on + strand, within RR42_RS25620at 1091.701 kb on + strand, within RR42_RS25620at 1091.701 kb on + strand, within RR42_RS25620at 1091.704 kb on - strand, within RR42_RS25620at 1091.887 kb on - strandat 1091.887 kb on - strandat 1091.921 kb on + strandat 1092.083 kb on - strandat 1092.083 kb on - strandat 1092.097 kb on + strandat 1092.098 kb on - strandat 1092.098 kb on - strandat 1092.158 kb on - strand, within RR42_RS25625at 1092.164 kb on - strand, within RR42_RS25625at 1092.164 kb on - strand, within RR42_RS25625at 1093.049 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
remove
1,091,055 - RR42_RS25615 0.43 +0.3
1,091,100 + RR42_RS25615 0.51 -0.0
1,091,212 + RR42_RS25615 0.70 -0.8
1,091,381 + +0.7
1,091,382 - -0.3
1,091,382 - +0.3
1,091,685 + RR42_RS25620 0.55 -0.1
1,091,685 + RR42_RS25620 0.55 -0.5
1,091,685 + RR42_RS25620 0.55 -1.4
1,091,685 + RR42_RS25620 0.55 -0.4
1,091,701 + RR42_RS25620 0.58 -0.1
1,091,701 + RR42_RS25620 0.58 -0.1
1,091,704 - RR42_RS25620 0.58 -0.7
1,091,887 - -0.1
1,091,887 - -0.5
1,091,921 + +0.2
1,092,083 - +0.5
1,092,083 - -0.4
1,092,097 + -0.2
1,092,098 - +1.0
1,092,098 - -0.5
1,092,158 - RR42_RS25625 0.16 +0.2
1,092,164 - RR42_RS25625 0.16 +1.4
1,092,164 - RR42_RS25625 0.16 +0.5
1,093,049 - +0.4

Or see this region's nucleotide sequence