Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24960 and RR42_RS24965 are separated by 160 nucleotides RR42_RS24965 and RR42_RS24970 are separated by 98 nucleotides
RR42_RS24960: RR42_RS24960 - long-chain fatty acid--CoA ligase, at 937,095 to 938,627
_RS24960
RR42_RS24965: RR42_RS24965 - acyl-CoA dehydrogenase, at 938,788 to 939,945
_RS24965
RR42_RS24970: RR42_RS24970 - acetyl-CoA acetyltransferase, at 940,044 to 941,252
_RS24970
Position (kb) 938
939
940 Strain fitness (log2 ratio) -1
0
1 at 937.875 kb on + strand, within RR42_RS24960 at 937.876 kb on - strand, within RR42_RS24960 at 937.876 kb on - strand, within RR42_RS24960 at 937.962 kb on + strand, within RR42_RS24960 at 937.963 kb on - strand, within RR42_RS24960 at 938.134 kb on + strand, within RR42_RS24960 at 938.134 kb on + strand, within RR42_RS24960 at 938.134 kb on + strand, within RR42_RS24960 at 938.403 kb on + strand, within RR42_RS24960 at 938.404 kb on - strand, within RR42_RS24960 at 938.404 kb on - strand, within RR42_RS24960 at 938.673 kb on - strand at 938.731 kb on + strand at 938.731 kb on + strand at 938.886 kb on - strand at 938.938 kb on + strand, within RR42_RS24965 at 938.938 kb on + strand, within RR42_RS24965 at 938.938 kb on + strand, within RR42_RS24965 at 939.065 kb on + strand, within RR42_RS24965 at 939.065 kb on + strand, within RR42_RS24965 at 939.280 kb on - strand, within RR42_RS24965 at 939.280 kb on - strand, within RR42_RS24965 at 939.435 kb on + strand, within RR42_RS24965 at 939.506 kb on + strand, within RR42_RS24965 at 939.507 kb on - strand, within RR42_RS24965 at 939.959 kb on - strand at 940.730 kb on + strand, within RR42_RS24970 at 940.730 kb on + strand, within RR42_RS24970 at 940.730 kb on + strand, within RR42_RS24970 at 940.731 kb on - strand, within RR42_RS24970 at 940.731 kb on - strand, within RR42_RS24970 at 940.735 kb on + strand, within RR42_RS24970 at 940.735 kb on + strand, within RR42_RS24970 at 940.736 kb on - strand, within RR42_RS24970 at 940.835 kb on - strand, within RR42_RS24970 at 940.882 kb on + strand, within RR42_RS24970 at 940.882 kb on + strand, within RR42_RS24970
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 937,875 + RR42_RS24960 0.51 -0.5 937,876 - RR42_RS24960 0.51 +0.6 937,876 - RR42_RS24960 0.51 -1.3 937,962 + RR42_RS24960 0.57 -0.3 937,963 - RR42_RS24960 0.57 +1.4 938,134 + RR42_RS24960 0.68 +0.1 938,134 + RR42_RS24960 0.68 -1.3 938,134 + RR42_RS24960 0.68 -0.8 938,403 + RR42_RS24960 0.85 -0.7 938,404 - RR42_RS24960 0.85 -0.8 938,404 - RR42_RS24960 0.85 +0.0 938,673 - -1.5 938,731 + -0.1 938,731 + -1.3 938,886 - +0.1 938,938 + RR42_RS24965 0.13 +0.7 938,938 + RR42_RS24965 0.13 +0.2 938,938 + RR42_RS24965 0.13 +1.0 939,065 + RR42_RS24965 0.24 -0.0 939,065 + RR42_RS24965 0.24 +0.2 939,280 - RR42_RS24965 0.42 -0.1 939,280 - RR42_RS24965 0.42 -0.2 939,435 + RR42_RS24965 0.56 +0.5 939,506 + RR42_RS24965 0.62 +1.1 939,507 - RR42_RS24965 0.62 -0.2 939,959 - +0.2 940,730 + RR42_RS24970 0.57 -0.2 940,730 + RR42_RS24970 0.57 -0.1 940,730 + RR42_RS24970 0.57 +0.2 940,731 - RR42_RS24970 0.57 +0.8 940,731 - RR42_RS24970 0.57 +0.7 940,735 + RR42_RS24970 0.57 -0.6 940,735 + RR42_RS24970 0.57 -1.2 940,736 - RR42_RS24970 0.57 +0.3 940,835 - RR42_RS24970 0.65 -0.3 940,882 + RR42_RS24970 0.69 +1.0 940,882 + RR42_RS24970 0.69 +0.7
Or see this region's nucleotide sequence