Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24495 and RR42_RS24500 are separated by 410 nucleotides RR42_RS24500 and RR42_RS24505 are separated by 1 nucleotides
RR42_RS24495: RR42_RS24495 - hypothetical protein, at 828,524 to 829,540
_RS24495
RR42_RS24500: RR42_RS24500 - hypothetical protein, at 829,951 to 830,262
_RS24500
RR42_RS24505: RR42_RS24505 - hypothetical protein, at 830,264 to 831,919
_RS24505
Position (kb) 829
830
831 Strain fitness (log2 ratio) -2
-1
0
1 at 829.116 kb on + strand, within RR42_RS24495 at 829.117 kb on - strand, within RR42_RS24495 at 829.137 kb on - strand, within RR42_RS24495 at 829.414 kb on - strand, within RR42_RS24495 at 829.555 kb on + strand at 829.555 kb on + strand at 829.556 kb on - strand at 829.561 kb on + strand at 829.562 kb on - strand at 829.667 kb on + strand at 829.667 kb on + strand at 829.668 kb on - strand at 829.829 kb on + strand at 829.829 kb on + strand at 829.830 kb on - strand at 829.992 kb on - strand, within RR42_RS24500 at 830.128 kb on - strand, within RR42_RS24500 at 830.128 kb on - strand, within RR42_RS24500 at 830.166 kb on + strand, within RR42_RS24500 at 830.169 kb on + strand, within RR42_RS24500 at 830.170 kb on - strand, within RR42_RS24500 at 830.170 kb on - strand, within RR42_RS24500 at 830.170 kb on - strand, within RR42_RS24500 at 830.173 kb on + strand, within RR42_RS24500 at 830.174 kb on - strand, within RR42_RS24500 at 830.235 kb on + strand at 830.238 kb on + strand at 830.238 kb on + strand at 830.238 kb on + strand at 830.239 kb on - strand at 830.239 kb on - strand at 830.312 kb on - strand at 830.397 kb on + strand at 830.398 kb on - strand at 830.606 kb on - strand, within RR42_RS24505 at 830.646 kb on + strand, within RR42_RS24505 at 830.647 kb on - strand, within RR42_RS24505 at 830.647 kb on - strand, within RR42_RS24505 at 830.647 kb on - strand, within RR42_RS24505 at 830.647 kb on - strand, within RR42_RS24505 at 830.647 kb on - strand, within RR42_RS24505 at 830.736 kb on - strand, within RR42_RS24505 at 830.736 kb on - strand, within RR42_RS24505 at 830.736 kb on - strand, within RR42_RS24505 at 830.784 kb on + strand, within RR42_RS24505 at 830.871 kb on - strand, within RR42_RS24505 at 830.893 kb on + strand, within RR42_RS24505 at 830.894 kb on - strand, within RR42_RS24505 at 830.905 kb on + strand, within RR42_RS24505 at 830.915 kb on - strand, within RR42_RS24505 at 830.919 kb on - strand, within RR42_RS24505 at 831.111 kb on - strand, within RR42_RS24505 at 831.214 kb on - strand, within RR42_RS24505 at 831.214 kb on - strand, within RR42_RS24505
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 829,116 + RR42_RS24495 0.58 -0.2 829,117 - RR42_RS24495 0.58 -0.2 829,137 - RR42_RS24495 0.60 -0.9 829,414 - RR42_RS24495 0.88 +1.4 829,555 + -0.5 829,555 + +0.7 829,556 - +0.1 829,561 + +0.1 829,562 - +0.1 829,667 + -1.3 829,667 + -0.6 829,668 - +0.3 829,829 + -0.0 829,829 + -1.6 829,830 - +0.8 829,992 - RR42_RS24500 0.13 +1.1 830,128 - RR42_RS24500 0.57 -0.2 830,128 - RR42_RS24500 0.57 +0.6 830,166 + RR42_RS24500 0.69 -0.3 830,169 + RR42_RS24500 0.70 +0.4 830,170 - RR42_RS24500 0.70 -0.2 830,170 - RR42_RS24500 0.70 +0.7 830,170 - RR42_RS24500 0.70 +1.2 830,173 + RR42_RS24500 0.71 +0.7 830,174 - RR42_RS24500 0.71 +1.0 830,235 + +0.5 830,238 + +0.0 830,238 + -0.4 830,238 + -0.2 830,239 - +0.2 830,239 - -0.1 830,312 - +0.1 830,397 + +0.1 830,398 - +0.5 830,606 - RR42_RS24505 0.21 +1.0 830,646 + RR42_RS24505 0.23 +0.7 830,647 - RR42_RS24505 0.23 +0.3 830,647 - RR42_RS24505 0.23 -1.8 830,647 - RR42_RS24505 0.23 -0.3 830,647 - RR42_RS24505 0.23 +0.3 830,647 - RR42_RS24505 0.23 -0.3 830,736 - RR42_RS24505 0.29 -0.4 830,736 - RR42_RS24505 0.29 -1.0 830,736 - RR42_RS24505 0.29 -0.2 830,784 + RR42_RS24505 0.31 +0.3 830,871 - RR42_RS24505 0.37 +1.1 830,893 + RR42_RS24505 0.38 +0.0 830,894 - RR42_RS24505 0.38 +1.3 830,905 + RR42_RS24505 0.39 +0.2 830,915 - RR42_RS24505 0.39 -0.6 830,919 - RR42_RS24505 0.40 -2.1 831,111 - RR42_RS24505 0.51 +0.9 831,214 - RR42_RS24505 0.57 +0.2 831,214 - RR42_RS24505 0.57 +1.6
Or see this region's nucleotide sequence