Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22530 and RR42_RS22535 are separated by 72 nucleotides RR42_RS22535 and RR42_RS22540 are separated by 238 nucleotides
RR42_RS22530: RR42_RS22530 - NADH:flavin oxidoreductase, at 391,921 to 392,976
_RS22530
RR42_RS22535: RR42_RS22535 - ArsR family transcriptional regulator, at 393,049 to 393,345
_RS22535
RR42_RS22540: RR42_RS22540 - membrane protein, at 393,584 to 394,813
_RS22540
Position (kb) 393
394 Strain fitness (log2 ratio) -2
-1
0
1
2 at 392.129 kb on + strand, within RR42_RS22530 at 392.129 kb on + strand, within RR42_RS22530 at 392.130 kb on - strand, within RR42_RS22530 at 392.130 kb on - strand, within RR42_RS22530 at 392.130 kb on - strand, within RR42_RS22530 at 392.130 kb on - strand, within RR42_RS22530 at 392.130 kb on - strand, within RR42_RS22530 at 392.237 kb on + strand, within RR42_RS22530 at 392.441 kb on + strand, within RR42_RS22530 at 392.441 kb on + strand, within RR42_RS22530 at 392.441 kb on + strand, within RR42_RS22530 at 392.661 kb on + strand, within RR42_RS22530 at 392.662 kb on - strand, within RR42_RS22530 at 392.662 kb on - strand, within RR42_RS22530 at 392.777 kb on + strand, within RR42_RS22530 at 392.846 kb on + strand, within RR42_RS22530 at 392.846 kb on + strand, within RR42_RS22530 at 392.847 kb on - strand, within RR42_RS22530 at 393.022 kb on + strand at 393.022 kb on + strand at 393.022 kb on + strand at 393.022 kb on + strand at 393.022 kb on + strand at 393.023 kb on - strand at 393.023 kb on - strand at 393.023 kb on - strand at 393.023 kb on - strand at 393.026 kb on + strand at 393.026 kb on + strand at 393.026 kb on + strand at 393.027 kb on - strand at 393.246 kb on - strand, within RR42_RS22535 at 393.246 kb on - strand, within RR42_RS22535 at 393.437 kb on - strand at 393.483 kb on + strand at 393.483 kb on + strand at 393.484 kb on - strand at 393.484 kb on - strand at 393.484 kb on - strand at 393.484 kb on - strand at 393.486 kb on + strand at 393.486 kb on + strand at 393.490 kb on + strand at 393.490 kb on + strand at 393.490 kb on + strand at 393.490 kb on + strand at 393.490 kb on + strand at 393.490 kb on + strand at 393.491 kb on - strand at 393.491 kb on - strand at 393.500 kb on - strand at 393.506 kb on - strand at 393.542 kb on + strand at 393.542 kb on + strand at 393.720 kb on - strand, within RR42_RS22540 at 393.720 kb on - strand, within RR42_RS22540 at 393.723 kb on - strand, within RR42_RS22540 at 393.723 kb on - strand, within RR42_RS22540 at 394.139 kb on + strand, within RR42_RS22540 at 394.139 kb on + strand, within RR42_RS22540 at 394.139 kb on + strand, within RR42_RS22540
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 392,129 + RR42_RS22530 0.20 +0.1 392,129 + RR42_RS22530 0.20 +0.5 392,130 - RR42_RS22530 0.20 +0.5 392,130 - RR42_RS22530 0.20 +0.3 392,130 - RR42_RS22530 0.20 +0.0 392,130 - RR42_RS22530 0.20 -0.5 392,130 - RR42_RS22530 0.20 +1.1 392,237 + RR42_RS22530 0.30 +0.1 392,441 + RR42_RS22530 0.49 +0.8 392,441 + RR42_RS22530 0.49 -0.5 392,441 + RR42_RS22530 0.49 -0.5 392,661 + RR42_RS22530 0.70 +1.8 392,662 - RR42_RS22530 0.70 +0.1 392,662 - RR42_RS22530 0.70 +0.4 392,777 + RR42_RS22530 0.81 -0.9 392,846 + RR42_RS22530 0.88 -0.7 392,846 + RR42_RS22530 0.88 -0.6 392,847 - RR42_RS22530 0.88 -0.7 393,022 + -0.3 393,022 + -0.9 393,022 + -0.4 393,022 + -0.1 393,022 + -1.6 393,023 - -0.4 393,023 - +0.5 393,023 - -0.4 393,023 - +0.2 393,026 + -1.0 393,026 + -1.2 393,026 + -0.6 393,027 - -0.7 393,246 - RR42_RS22535 0.66 +1.0 393,246 - RR42_RS22535 0.66 -0.1 393,437 - -0.4 393,483 + +0.8 393,483 + +0.4 393,484 - -1.2 393,484 - +0.3 393,484 - -0.7 393,484 - -0.0 393,486 + +0.3 393,486 + -0.9 393,490 + +1.1 393,490 + +1.1 393,490 + -2.1 393,490 + -1.1 393,490 + +0.6 393,490 + +0.2 393,491 - +0.2 393,491 - -0.1 393,500 - +1.2 393,506 - +0.8 393,542 + +1.3 393,542 + -0.3 393,720 - RR42_RS22540 0.11 +0.9 393,720 - RR42_RS22540 0.11 +0.2 393,723 - RR42_RS22540 0.11 -0.3 393,723 - RR42_RS22540 0.11 -0.6 394,139 + RR42_RS22540 0.45 -1.4 394,139 + RR42_RS22540 0.45 -0.9 394,139 + RR42_RS22540 0.45 +0.0
Or see this region's nucleotide sequence