Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22360

Experiment: R2A with Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22350 and RR42_RS22355 are separated by 211 nucleotidesRR42_RS22355 and RR42_RS22360 are separated by 263 nucleotidesRR42_RS22360 and RR42_RS22370 are separated by 991 nucleotides RR42_RS22350: RR42_RS22350 - transporter, at 354,546 to 354,974 _RS22350 RR42_RS22355: RR42_RS22355 - ModE family transcriptional regulator, at 355,186 to 355,512 _RS22355 RR42_RS22360: RR42_RS22360 - hypothetical protein, at 355,776 to 355,985 _RS22360 RR42_RS22370: RR42_RS22370 - hypothetical protein, at 356,977 to 357,252 _RS22370 Position (kb) 355 356Strain fitness (log2 ratio) -2 -1 0 1at 355.025 kb on - strandat 355.041 kb on + strandat 355.041 kb on + strandat 355.041 kb on + strandat 355.041 kb on + strandat 355.042 kb on - strandat 355.042 kb on - strandat 355.042 kb on - strandat 355.071 kb on - strandat 355.112 kb on - strandat 355.432 kb on + strand, within RR42_RS22355at 355.449 kb on - strand, within RR42_RS22355at 355.524 kb on + strandat 355.525 kb on - strandat 355.643 kb on - strandat 355.643 kb on - strandat 355.807 kb on + strand, within RR42_RS22360at 355.807 kb on + strand, within RR42_RS22360at 355.975 kb on + strandat 355.976 kb on - strandat 356.006 kb on + strandat 356.006 kb on + strandat 356.007 kb on - strandat 356.087 kb on - strandat 356.218 kb on - strandat 356.218 kb on - strandat 356.501 kb on + strandat 356.501 kb on + strandat 356.502 kb on - strandat 356.542 kb on + strandat 356.542 kb on + strandat 356.543 kb on - strandat 356.646 kb on + strandat 356.646 kb on + strandat 356.740 kb on + strandat 356.740 kb on + strandat 356.875 kb on - strandat 356.980 kb on + strandat 356.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
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355,025 - +1.1
355,041 + +0.7
355,041 + +0.5
355,041 + +0.5
355,041 + -0.4
355,042 - -0.1
355,042 - -0.3
355,042 - -0.1
355,071 - -0.4
355,112 - +0.9
355,432 + RR42_RS22355 0.75 +0.5
355,449 - RR42_RS22355 0.80 -0.4
355,524 + -0.2
355,525 - +0.7
355,643 - +0.6
355,643 - -0.1
355,807 + RR42_RS22360 0.15 -1.3
355,807 + RR42_RS22360 0.15 +0.8
355,975 + -1.2
355,976 - +1.0
356,006 + +0.5
356,006 + -0.2
356,007 - -2.1
356,087 - +0.1
356,218 - +1.5
356,218 - +0.4
356,501 + -1.6
356,501 + +0.3
356,502 - +0.7
356,542 + -2.0
356,542 + +0.3
356,543 - -1.1
356,646 + -1.0
356,646 + +1.5
356,740 + +0.5
356,740 + +0.1
356,875 - +0.1
356,980 + -0.0
356,981 - +0.3

Or see this region's nucleotide sequence