Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22350 and RR42_RS22355 are separated by 211 nucleotides RR42_RS22355 and RR42_RS22360 are separated by 263 nucleotides RR42_RS22360 and RR42_RS22370 are separated by 991 nucleotides
RR42_RS22350: RR42_RS22350 - transporter, at 354,546 to 354,974
_RS22350
RR42_RS22355: RR42_RS22355 - ModE family transcriptional regulator, at 355,186 to 355,512
_RS22355
RR42_RS22360: RR42_RS22360 - hypothetical protein, at 355,776 to 355,985
_RS22360
RR42_RS22370: RR42_RS22370 - hypothetical protein, at 356,977 to 357,252
_RS22370
Position (kb)
355
356 Strain fitness (log2 ratio)
-2
-1
0
1 at 355.025 kb on - strand at 355.041 kb on + strand at 355.041 kb on + strand at 355.041 kb on + strand at 355.041 kb on + strand at 355.042 kb on - strand at 355.042 kb on - strand at 355.042 kb on - strand at 355.071 kb on - strand at 355.112 kb on - strand at 355.432 kb on + strand, within RR42_RS22355 at 355.449 kb on - strand, within RR42_RS22355 at 355.524 kb on + strand at 355.525 kb on - strand at 355.643 kb on - strand at 355.643 kb on - strand at 355.807 kb on + strand, within RR42_RS22360 at 355.807 kb on + strand, within RR42_RS22360 at 355.975 kb on + strand at 355.976 kb on - strand at 356.006 kb on + strand at 356.006 kb on + strand at 356.007 kb on - strand at 356.087 kb on - strand at 356.218 kb on - strand at 356.218 kb on - strand at 356.501 kb on + strand at 356.501 kb on + strand at 356.502 kb on - strand at 356.542 kb on + strand at 356.542 kb on + strand at 356.543 kb on - strand at 356.646 kb on + strand at 356.646 kb on + strand at 356.740 kb on + strand at 356.740 kb on + strand at 356.875 kb on - strand at 356.980 kb on + strand at 356.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 355,025 - +1.1 355,041 + +0.7 355,041 + +0.5 355,041 + +0.5 355,041 + -0.4 355,042 - -0.1 355,042 - -0.3 355,042 - -0.1 355,071 - -0.4 355,112 - +0.9 355,432 + RR42_RS22355 0.75 +0.5 355,449 - RR42_RS22355 0.80 -0.4 355,524 + -0.2 355,525 - +0.7 355,643 - +0.6 355,643 - -0.1 355,807 + RR42_RS22360 0.15 -1.3 355,807 + RR42_RS22360 0.15 +0.8 355,975 + -1.2 355,976 - +1.0 356,006 + +0.5 356,006 + -0.2 356,007 - -2.1 356,087 - +0.1 356,218 - +1.5 356,218 - +0.4 356,501 + -1.6 356,501 + +0.3 356,502 - +0.7 356,542 + -2.0 356,542 + +0.3 356,543 - -1.1 356,646 + -1.0 356,646 + +1.5 356,740 + +0.5 356,740 + +0.1 356,875 - +0.1 356,980 + -0.0 356,981 - +0.3
Or see this region's nucleotide sequence