Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22060 and RR42_RS22065 are separated by 25 nucleotides RR42_RS22065 and RR42_RS22070 are separated by 233 nucleotides RR42_RS22070 and RR42_RS22075 are separated by 93 nucleotides
RR42_RS22060: RR42_RS22060 - type VI secretion protein EvpB, at 282,821 to 284,368
_RS22060
RR42_RS22065: RR42_RS22065 - type VI secretion protein, at 284,394 to 284,909
_RS22065
RR42_RS22070: RR42_RS22070 - type IV secretion protein Rhs, at 285,143 to 287,623
_RS22070
RR42_RS22075: RR42_RS22075 - hypothetical protein, at 287,717 to 288,985
_RS22075
Position (kb) 285
286
287
288 Strain fitness (log2 ratio) -1
0
1
2 at 284.289 kb on + strand at 284.396 kb on - strand at 284.788 kb on + strand, within RR42_RS22065 at 284.789 kb on - strand, within RR42_RS22065 at 284.865 kb on - strand at 284.971 kb on - strand at 284.988 kb on + strand at 284.988 kb on + strand at 285.013 kb on + strand at 285.013 kb on + strand at 285.018 kb on - strand at 285.027 kb on - strand at 285.078 kb on + strand at 285.170 kb on + strand at 285.210 kb on - strand at 285.210 kb on - strand at 285.967 kb on + strand, within RR42_RS22070 at 285.967 kb on + strand, within RR42_RS22070 at 286.055 kb on + strand, within RR42_RS22070 at 287.404 kb on + strand at 287.405 kb on - strand at 287.405 kb on - strand at 287.410 kb on + strand at 287.411 kb on - strand at 287.411 kb on - strand at 287.441 kb on + strand at 287.441 kb on + strand at 287.489 kb on + strand at 287.519 kb on - strand at 287.624 kb on + strand at 287.945 kb on + strand, within RR42_RS22075 at 287.946 kb on - strand, within RR42_RS22075 at 287.946 kb on - strand, within RR42_RS22075 at 287.946 kb on - strand, within RR42_RS22075 at 288.193 kb on + strand, within RR42_RS22075 at 288.274 kb on - strand, within RR42_RS22075 at 288.367 kb on - strand, within RR42_RS22075 at 288.367 kb on - strand, within RR42_RS22075
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 284,289 + -0.0 284,396 - +0.9 284,788 + RR42_RS22065 0.76 -0.0 284,789 - RR42_RS22065 0.77 -0.6 284,865 - -0.5 284,971 - +0.8 284,988 + -1.2 284,988 + +0.1 285,013 + +2.7 285,013 + -0.5 285,018 - +0.1 285,027 - -0.3 285,078 + +0.3 285,170 + +1.2 285,210 - +1.1 285,210 - +0.8 285,967 + RR42_RS22070 0.33 +0.0 285,967 + RR42_RS22070 0.33 +1.9 286,055 + RR42_RS22070 0.37 +0.5 287,404 + -1.1 287,405 - +0.5 287,405 - +0.2 287,410 + -1.5 287,411 - -0.5 287,411 - +0.2 287,441 + -1.2 287,441 + +0.5 287,489 + -1.4 287,519 - +0.2 287,624 + -0.8 287,945 + RR42_RS22075 0.18 -0.1 287,946 - RR42_RS22075 0.18 +0.6 287,946 - RR42_RS22075 0.18 -1.1 287,946 - RR42_RS22075 0.18 -0.2 288,193 + RR42_RS22075 0.38 +0.3 288,274 - RR42_RS22075 0.44 -0.3 288,367 - RR42_RS22075 0.51 +0.6 288,367 - RR42_RS22075 0.51 -0.8
Or see this region's nucleotide sequence