Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21950 and RR42_RS21955 are separated by 19 nucleotides RR42_RS21955 and RR42_RS21960 are separated by 195 nucleotides
RR42_RS21950: RR42_RS21950 - hypothetical protein, at 250,144 to 251,877
_RS21950
RR42_RS21955: RR42_RS21955 - hypothetical protein, at 251,897 to 252,097
_RS21955
RR42_RS21960: RR42_RS21960 - cysteine synthase, at 252,293 to 253,210
_RS21960
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1 at 251.331 kb on + strand, within RR42_RS21950 at 251.331 kb on + strand, within RR42_RS21950 at 251.331 kb on + strand, within RR42_RS21950 at 251.331 kb on + strand, within RR42_RS21950 at 251.332 kb on - strand, within RR42_RS21950 at 251.332 kb on - strand, within RR42_RS21950 at 251.332 kb on - strand, within RR42_RS21950 at 251.332 kb on - strand, within RR42_RS21950 at 251.382 kb on + strand, within RR42_RS21950 at 251.383 kb on - strand, within RR42_RS21950 at 251.383 kb on - strand, within RR42_RS21950 at 251.383 kb on - strand, within RR42_RS21950 at 251.383 kb on - strand, within RR42_RS21950 at 251.504 kb on - strand, within RR42_RS21950 at 251.702 kb on + strand, within RR42_RS21950 at 251.789 kb on - strand at 251.854 kb on + strand at 251.854 kb on + strand at 251.854 kb on + strand at 251.855 kb on - strand at 251.855 kb on - strand at 251.855 kb on - strand at 251.898 kb on + strand at 251.898 kb on + strand at 251.899 kb on - strand at 252.039 kb on - strand, within RR42_RS21955 at 252.039 kb on - strand, within RR42_RS21955 at 252.081 kb on + strand at 252.081 kb on + strand at 252.082 kb on - strand at 252.082 kb on - strand at 252.082 kb on - strand at 252.239 kb on - strand at 252.239 kb on - strand at 252.239 kb on - strand at 252.239 kb on - strand at 252.324 kb on + strand at 252.325 kb on - strand at 252.549 kb on - strand, within RR42_RS21960 at 252.618 kb on + strand, within RR42_RS21960 at 252.619 kb on - strand, within RR42_RS21960 at 252.670 kb on + strand, within RR42_RS21960 at 252.671 kb on - strand, within RR42_RS21960 at 252.671 kb on - strand, within RR42_RS21960 at 252.766 kb on + strand, within RR42_RS21960 at 252.891 kb on + strand, within RR42_RS21960 at 252.955 kb on - strand, within RR42_RS21960 at 252.955 kb on - strand, within RR42_RS21960 at 252.995 kb on - strand, within RR42_RS21960
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 251,331 + RR42_RS21950 0.68 -2.6 251,331 + RR42_RS21950 0.68 -0.7 251,331 + RR42_RS21950 0.68 +0.2 251,331 + RR42_RS21950 0.68 -1.9 251,332 - RR42_RS21950 0.69 +0.3 251,332 - RR42_RS21950 0.69 +1.0 251,332 - RR42_RS21950 0.69 +0.7 251,332 - RR42_RS21950 0.69 +0.4 251,382 + RR42_RS21950 0.71 -1.2 251,383 - RR42_RS21950 0.71 -0.3 251,383 - RR42_RS21950 0.71 -0.3 251,383 - RR42_RS21950 0.71 +0.0 251,383 - RR42_RS21950 0.71 -0.3 251,504 - RR42_RS21950 0.78 -0.2 251,702 + RR42_RS21950 0.90 +0.3 251,789 - +0.5 251,854 + +0.2 251,854 + -0.7 251,854 + +0.1 251,855 - +0.5 251,855 - +0.7 251,855 - +0.6 251,898 + -0.3 251,898 + -0.8 251,899 - -0.5 252,039 - RR42_RS21955 0.71 +1.4 252,039 - RR42_RS21955 0.71 +0.1 252,081 + +0.3 252,081 + +0.4 252,082 - -0.7 252,082 - -1.3 252,082 - -1.0 252,239 - -1.4 252,239 - +0.6 252,239 - -0.8 252,239 - -0.0 252,324 + +1.1 252,325 - -0.9 252,549 - RR42_RS21960 0.28 -1.2 252,618 + RR42_RS21960 0.35 -0.1 252,619 - RR42_RS21960 0.36 +0.4 252,670 + RR42_RS21960 0.41 +0.5 252,671 - RR42_RS21960 0.41 -0.7 252,671 - RR42_RS21960 0.41 +0.5 252,766 + RR42_RS21960 0.52 -2.3 252,891 + RR42_RS21960 0.65 -0.3 252,955 - RR42_RS21960 0.72 -0.3 252,955 - RR42_RS21960 0.72 +0.4 252,995 - RR42_RS21960 0.76 +0.0
Or see this region's nucleotide sequence