Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20915 and RR42_RS20920 are separated by 12 nucleotides RR42_RS20920 and RR42_RS20925 are separated by 278 nucleotides
RR42_RS20915: RR42_RS20915 - hypothetical protein, at 14,726 to 15,718
_RS20915
RR42_RS20920: RR42_RS20920 - glycoside hydrolase, at 15,731 to 18,355
_RS20920
RR42_RS20925: RR42_RS20925 - Crp/Fnr family transcriptional regulator, at 18,634 to 19,356
_RS20925
Position (kb) 15
16
17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.816 kb on + strand at 14.816 kb on + strand at 14.816 kb on + strand at 14.820 kb on + strand at 14.820 kb on + strand at 14.821 kb on - strand at 14.984 kb on + strand, within RR42_RS20915 at 14.985 kb on - strand, within RR42_RS20915 at 15.036 kb on + strand, within RR42_RS20915 at 15.037 kb on - strand, within RR42_RS20915 at 15.060 kb on - strand, within RR42_RS20915 at 15.101 kb on - strand, within RR42_RS20915 at 15.101 kb on - strand, within RR42_RS20915 at 15.174 kb on - strand, within RR42_RS20915 at 15.443 kb on + strand, within RR42_RS20915 at 15.452 kb on - strand, within RR42_RS20915 at 15.452 kb on - strand, within RR42_RS20915 at 15.497 kb on + strand, within RR42_RS20915 at 15.497 kb on + strand, within RR42_RS20915 at 15.611 kb on - strand, within RR42_RS20915 at 15.666 kb on - strand at 15.695 kb on + strand at 16.025 kb on - strand, within RR42_RS20920 at 16.361 kb on - strand, within RR42_RS20920 at 16.512 kb on - strand, within RR42_RS20920 at 17.156 kb on - strand, within RR42_RS20920 at 17.183 kb on + strand, within RR42_RS20920 at 17.184 kb on - strand, within RR42_RS20920 at 17.350 kb on + strand, within RR42_RS20920 at 17.351 kb on - strand, within RR42_RS20920 at 17.351 kb on - strand, within RR42_RS20920 at 17.351 kb on - strand, within RR42_RS20920 at 17.459 kb on + strand, within RR42_RS20920 at 17.459 kb on + strand, within RR42_RS20920 at 17.930 kb on + strand, within RR42_RS20920 at 17.930 kb on + strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 18.265 kb on - strand at 18.265 kb on - strand at 18.335 kb on + strand at 18.335 kb on + strand at 18.336 kb on - strand at 18.502 kb on + strand at 18.502 kb on + strand at 18.502 kb on + strand at 18.503 kb on - strand at 18.503 kb on - strand at 18.511 kb on + strand at 18.514 kb on + strand at 18.515 kb on - strand at 18.729 kb on - strand, within RR42_RS20925 at 19.019 kb on - strand, within RR42_RS20925 at 19.239 kb on + strand, within RR42_RS20925 at 19.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 14,816 + -1.4 14,816 + -0.2 14,816 + -0.3 14,820 + -0.4 14,820 + -0.3 14,821 - +0.7 14,984 + RR42_RS20915 0.26 -2.3 14,985 - RR42_RS20915 0.26 -1.0 15,036 + RR42_RS20915 0.31 +0.7 15,037 - RR42_RS20915 0.31 +0.1 15,060 - RR42_RS20915 0.34 -0.4 15,101 - RR42_RS20915 0.38 -0.7 15,101 - RR42_RS20915 0.38 -0.0 15,174 - RR42_RS20915 0.45 +0.7 15,443 + RR42_RS20915 0.72 +0.1 15,452 - RR42_RS20915 0.73 -0.6 15,452 - RR42_RS20915 0.73 +0.2 15,497 + RR42_RS20915 0.78 -0.2 15,497 + RR42_RS20915 0.78 +0.3 15,611 - RR42_RS20915 0.89 +0.1 15,666 - -0.4 15,695 + +0.1 16,025 - RR42_RS20920 0.11 +2.4 16,361 - RR42_RS20920 0.24 +0.6 16,512 - RR42_RS20920 0.30 +0.6 17,156 - RR42_RS20920 0.54 +0.6 17,183 + RR42_RS20920 0.55 -1.9 17,184 - RR42_RS20920 0.55 -0.6 17,350 + RR42_RS20920 0.62 -3.0 17,351 - RR42_RS20920 0.62 -0.4 17,351 - RR42_RS20920 0.62 +0.4 17,351 - RR42_RS20920 0.62 +0.3 17,459 + RR42_RS20920 0.66 -1.5 17,459 + RR42_RS20920 0.66 -0.1 17,930 + RR42_RS20920 0.84 -0.3 17,930 + RR42_RS20920 0.84 +0.4 17,931 - RR42_RS20920 0.84 -0.2 17,931 - RR42_RS20920 0.84 +1.0 17,931 - RR42_RS20920 0.84 +1.1 17,931 - RR42_RS20920 0.84 +0.7 17,931 - RR42_RS20920 0.84 +1.0 18,265 - +0.5 18,265 - +0.3 18,335 + -0.1 18,335 + -1.3 18,336 - +0.5 18,502 + -0.1 18,502 + -0.8 18,502 + -0.2 18,503 - -0.7 18,503 - -0.5 18,511 + +0.5 18,514 + +0.2 18,515 - -1.9 18,729 - RR42_RS20925 0.13 +0.4 19,019 - RR42_RS20925 0.53 +0.1 19,239 + RR42_RS20925 0.84 -1.6 19,300 + -0.2
Or see this region's nucleotide sequence