Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19595 and RR42_RS19600 are separated by 23 nucleotides RR42_RS19600 and RR42_RS19605 are separated by 339 nucleotides RR42_RS19605 and RR42_RS19610 are separated by 237 nucleotides
RR42_RS19595: RR42_RS19595 - amino acid ABC transporter permease, at 4,233,891 to 4,235,012
_RS19595
RR42_RS19600: RR42_RS19600 - aromatic ring-opening dioxygenase LigB, at 4,235,036 to 4,235,929
_RS19600
RR42_RS19605: RR42_RS19605 - hypothetical protein, at 4,236,269 to 4,236,595
_RS19605
RR42_RS19610: RR42_RS19610 - MFS transporter, at 4,236,833 to 4,238,131
_RS19610
Position (kb) 4235
4236 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4234.244 kb on + strand, within RR42_RS19595 at 4234.244 kb on + strand, within RR42_RS19595 at 4234.245 kb on - strand, within RR42_RS19595 at 4234.245 kb on - strand, within RR42_RS19595 at 4234.245 kb on - strand, within RR42_RS19595 at 4234.245 kb on - strand, within RR42_RS19595 at 4234.472 kb on - strand, within RR42_RS19595 at 4234.472 kb on - strand, within RR42_RS19595 at 4234.515 kb on + strand, within RR42_RS19595 at 4234.515 kb on + strand, within RR42_RS19595 at 4234.515 kb on + strand, within RR42_RS19595 at 4234.515 kb on + strand, within RR42_RS19595 at 4234.515 kb on + strand, within RR42_RS19595 at 4234.515 kb on + strand, within RR42_RS19595 at 4234.515 kb on + strand, within RR42_RS19595 at 4234.515 kb on + strand, within RR42_RS19595 at 4234.515 kb on + strand, within RR42_RS19595 at 4234.516 kb on - strand, within RR42_RS19595 at 4234.516 kb on - strand, within RR42_RS19595 at 4234.516 kb on - strand, within RR42_RS19595 at 4234.516 kb on - strand, within RR42_RS19595 at 4234.516 kb on - strand, within RR42_RS19595 at 4234.516 kb on - strand, within RR42_RS19595 at 4234.516 kb on - strand, within RR42_RS19595 at 4234.533 kb on + strand, within RR42_RS19595 at 4234.534 kb on - strand, within RR42_RS19595 at 4234.534 kb on - strand, within RR42_RS19595 at 4234.534 kb on - strand, within RR42_RS19595 at 4234.534 kb on - strand, within RR42_RS19595 at 4234.857 kb on + strand, within RR42_RS19595 at 4234.857 kb on + strand, within RR42_RS19595 at 4234.857 kb on + strand, within RR42_RS19595 at 4234.857 kb on + strand, within RR42_RS19595 at 4234.858 kb on - strand, within RR42_RS19595 at 4234.858 kb on - strand, within RR42_RS19595 at 4234.858 kb on - strand, within RR42_RS19595 at 4234.860 kb on - strand, within RR42_RS19595 at 4234.989 kb on + strand at 4234.989 kb on + strand at 4234.989 kb on + strand at 4234.989 kb on + strand at 4234.990 kb on - strand at 4235.095 kb on + strand at 4235.116 kb on - strand at 4235.116 kb on - strand at 4235.116 kb on - strand at 4235.116 kb on - strand at 4235.116 kb on - strand at 4235.116 kb on - strand at 4235.253 kb on + strand, within RR42_RS19600 at 4235.352 kb on + strand, within RR42_RS19600 at 4235.352 kb on + strand, within RR42_RS19600 at 4235.353 kb on - strand, within RR42_RS19600 at 4235.353 kb on - strand, within RR42_RS19600 at 4235.353 kb on - strand, within RR42_RS19600 at 4235.353 kb on - strand, within RR42_RS19600 at 4235.353 kb on - strand, within RR42_RS19600 at 4235.353 kb on - strand, within RR42_RS19600 at 4235.422 kb on + strand, within RR42_RS19600 at 4235.422 kb on + strand, within RR42_RS19600 at 4235.423 kb on - strand, within RR42_RS19600 at 4235.423 kb on - strand, within RR42_RS19600 at 4235.512 kb on - strand, within RR42_RS19600 at 4235.512 kb on - strand, within RR42_RS19600 at 4235.512 kb on - strand, within RR42_RS19600 at 4235.512 kb on - strand, within RR42_RS19600 at 4235.709 kb on + strand, within RR42_RS19600 at 4235.709 kb on + strand, within RR42_RS19600 at 4235.784 kb on + strand, within RR42_RS19600 at 4235.785 kb on - strand, within RR42_RS19600 at 4235.785 kb on - strand, within RR42_RS19600 at 4235.810 kb on + strand, within RR42_RS19600 at 4235.811 kb on - strand, within RR42_RS19600 at 4235.913 kb on + strand at 4235.913 kb on + strand at 4235.913 kb on + strand at 4235.913 kb on + strand at 4235.913 kb on + strand at 4235.913 kb on + strand at 4235.913 kb on + strand at 4235.914 kb on - strand at 4235.914 kb on - strand at 4235.914 kb on - strand at 4235.914 kb on - strand at 4235.914 kb on - strand at 4235.914 kb on - strand at 4235.955 kb on + strand at 4235.999 kb on + strand at 4235.999 kb on + strand at 4236.000 kb on - strand at 4236.000 kb on - strand at 4236.000 kb on - strand at 4236.063 kb on + strand at 4236.063 kb on + strand at 4236.063 kb on + strand at 4236.063 kb on + strand at 4236.064 kb on - strand at 4236.064 kb on - strand at 4236.064 kb on - strand at 4236.145 kb on + strand at 4236.145 kb on + strand at 4236.332 kb on + strand, within RR42_RS19605 at 4236.332 kb on + strand, within RR42_RS19605 at 4236.332 kb on + strand, within RR42_RS19605 at 4236.332 kb on + strand, within RR42_RS19605 at 4236.332 kb on + strand, within RR42_RS19605 at 4236.332 kb on + strand, within RR42_RS19605 at 4236.333 kb on - strand, within RR42_RS19605 at 4236.333 kb on - strand, within RR42_RS19605 at 4236.333 kb on - strand, within RR42_RS19605 at 4236.333 kb on - strand, within RR42_RS19605 at 4236.333 kb on - strand, within RR42_RS19605 at 4236.333 kb on - strand, within RR42_RS19605 at 4236.333 kb on - strand, within RR42_RS19605 at 4236.357 kb on + strand, within RR42_RS19605 at 4236.399 kb on + strand, within RR42_RS19605 at 4236.399 kb on + strand, within RR42_RS19605 at 4236.399 kb on + strand, within RR42_RS19605 at 4236.399 kb on + strand, within RR42_RS19605 at 4236.399 kb on + strand, within RR42_RS19605 at 4236.400 kb on - strand, within RR42_RS19605 at 4236.400 kb on - strand, within RR42_RS19605 at 4236.400 kb on - strand, within RR42_RS19605 at 4236.400 kb on - strand, within RR42_RS19605 at 4236.512 kb on - strand, within RR42_RS19605 at 4236.512 kb on - strand, within RR42_RS19605 at 4236.727 kb on - strand at 4236.727 kb on - strand at 4236.727 kb on - strand at 4236.727 kb on - strand at 4236.727 kb on - strand at 4236.727 kb on - strand at 4236.738 kb on + strand at 4236.738 kb on + strand at 4236.739 kb on - strand at 4236.739 kb on - strand at 4236.742 kb on - strand at 4236.742 kb on - strand at 4236.834 kb on + strand at 4236.834 kb on + strand at 4236.835 kb on - strand at 4236.835 kb on - strand at 4236.853 kb on - strand at 4236.929 kb on + strand at 4236.929 kb on + strand at 4236.929 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 4,234,244 + RR42_RS19595 0.31 +0.3 4,234,244 + RR42_RS19595 0.31 +0.4 4,234,245 - RR42_RS19595 0.32 +1.2 4,234,245 - RR42_RS19595 0.32 +0.6 4,234,245 - RR42_RS19595 0.32 +0.1 4,234,245 - RR42_RS19595 0.32 -0.6 4,234,472 - RR42_RS19595 0.52 -0.6 4,234,472 - RR42_RS19595 0.52 +0.8 4,234,515 + RR42_RS19595 0.56 -0.2 4,234,515 + RR42_RS19595 0.56 -0.6 4,234,515 + RR42_RS19595 0.56 -1.0 4,234,515 + RR42_RS19595 0.56 +0.1 4,234,515 + RR42_RS19595 0.56 -1.4 4,234,515 + RR42_RS19595 0.56 +0.1 4,234,515 + RR42_RS19595 0.56 +0.7 4,234,515 + RR42_RS19595 0.56 -0.7 4,234,515 + RR42_RS19595 0.56 -1.0 4,234,516 - RR42_RS19595 0.56 +3.5 4,234,516 - RR42_RS19595 0.56 -0.8 4,234,516 - RR42_RS19595 0.56 -0.9 4,234,516 - RR42_RS19595 0.56 +0.7 4,234,516 - RR42_RS19595 0.56 -1.2 4,234,516 - RR42_RS19595 0.56 +0.4 4,234,516 - RR42_RS19595 0.56 +0.6 4,234,533 + RR42_RS19595 0.57 +0.4 4,234,534 - RR42_RS19595 0.57 -0.3 4,234,534 - RR42_RS19595 0.57 +0.2 4,234,534 - RR42_RS19595 0.57 -0.9 4,234,534 - RR42_RS19595 0.57 +0.2 4,234,857 + RR42_RS19595 0.86 +0.1 4,234,857 + RR42_RS19595 0.86 +0.7 4,234,857 + RR42_RS19595 0.86 -0.7 4,234,857 + RR42_RS19595 0.86 -0.3 4,234,858 - RR42_RS19595 0.86 -0.1 4,234,858 - RR42_RS19595 0.86 +0.3 4,234,858 - RR42_RS19595 0.86 -0.2 4,234,860 - RR42_RS19595 0.86 +1.1 4,234,989 + -0.4 4,234,989 + -0.0 4,234,989 + -0.2 4,234,989 + +0.5 4,234,990 - +1.2 4,235,095 + -0.4 4,235,116 - +0.8 4,235,116 - +0.0 4,235,116 - -0.3 4,235,116 - -0.1 4,235,116 - -1.2 4,235,116 - +1.1 4,235,253 + RR42_RS19600 0.24 +1.4 4,235,352 + RR42_RS19600 0.35 +1.2 4,235,352 + RR42_RS19600 0.35 +0.5 4,235,353 - RR42_RS19600 0.35 +0.9 4,235,353 - RR42_RS19600 0.35 -0.4 4,235,353 - RR42_RS19600 0.35 -0.5 4,235,353 - RR42_RS19600 0.35 -0.3 4,235,353 - RR42_RS19600 0.35 +1.3 4,235,353 - RR42_RS19600 0.35 +0.2 4,235,422 + RR42_RS19600 0.43 +0.3 4,235,422 + RR42_RS19600 0.43 +0.3 4,235,423 - RR42_RS19600 0.43 -0.6 4,235,423 - RR42_RS19600 0.43 +0.9 4,235,512 - RR42_RS19600 0.53 +0.8 4,235,512 - RR42_RS19600 0.53 +0.6 4,235,512 - RR42_RS19600 0.53 +0.9 4,235,512 - RR42_RS19600 0.53 +0.3 4,235,709 + RR42_RS19600 0.75 +1.6 4,235,709 + RR42_RS19600 0.75 +0.8 4,235,784 + RR42_RS19600 0.84 -0.2 4,235,785 - RR42_RS19600 0.84 +0.3 4,235,785 - RR42_RS19600 0.84 +0.3 4,235,810 + RR42_RS19600 0.87 +0.4 4,235,811 - RR42_RS19600 0.87 -0.2 4,235,913 + -0.1 4,235,913 + +0.2 4,235,913 + -0.0 4,235,913 + -0.1 4,235,913 + -0.8 4,235,913 + -0.8 4,235,913 + -0.7 4,235,914 - -0.1 4,235,914 - +0.3 4,235,914 - -0.8 4,235,914 - +0.4 4,235,914 - +0.1 4,235,914 - +0.1 4,235,955 + -0.5 4,235,999 + +0.3 4,235,999 + -0.6 4,236,000 - +0.3 4,236,000 - +0.3 4,236,000 - +0.5 4,236,063 + -0.3 4,236,063 + -0.7 4,236,063 + -0.5 4,236,063 + -0.5 4,236,064 - -0.6 4,236,064 - +0.1 4,236,064 - +3.1 4,236,145 + +0.4 4,236,145 + -0.8 4,236,332 + RR42_RS19605 0.19 +1.4 4,236,332 + RR42_RS19605 0.19 +0.1 4,236,332 + RR42_RS19605 0.19 -0.4 4,236,332 + RR42_RS19605 0.19 -0.1 4,236,332 + RR42_RS19605 0.19 -0.2 4,236,332 + RR42_RS19605 0.19 -0.3 4,236,333 - RR42_RS19605 0.20 +0.8 4,236,333 - RR42_RS19605 0.20 +0.1 4,236,333 - RR42_RS19605 0.20 -0.1 4,236,333 - RR42_RS19605 0.20 +0.2 4,236,333 - RR42_RS19605 0.20 +0.2 4,236,333 - RR42_RS19605 0.20 -0.0 4,236,333 - RR42_RS19605 0.20 -1.8 4,236,357 + RR42_RS19605 0.27 +0.3 4,236,399 + RR42_RS19605 0.40 +0.1 4,236,399 + RR42_RS19605 0.40 +0.3 4,236,399 + RR42_RS19605 0.40 +1.1 4,236,399 + RR42_RS19605 0.40 -0.2 4,236,399 + RR42_RS19605 0.40 +0.4 4,236,400 - RR42_RS19605 0.40 +1.1 4,236,400 - RR42_RS19605 0.40 -0.5 4,236,400 - RR42_RS19605 0.40 +1.3 4,236,400 - RR42_RS19605 0.40 +0.2 4,236,512 - RR42_RS19605 0.74 -0.2 4,236,512 - RR42_RS19605 0.74 +0.9 4,236,727 - -0.9 4,236,727 - -1.4 4,236,727 - +0.2 4,236,727 - -1.6 4,236,727 - -0.8 4,236,727 - -0.7 4,236,738 + -1.8 4,236,738 + +0.0 4,236,739 - -0.0 4,236,739 - -0.6 4,236,742 - +0.1 4,236,742 - +0.2 4,236,834 + +0.3 4,236,834 + +0.1 4,236,835 - -1.1 4,236,835 - -0.6 4,236,853 - -0.2 4,236,929 + -0.1 4,236,929 + +0.0 4,236,929 + +0.2
Or see this region's nucleotide sequence