Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15015

Experiment: R2A with Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15005 and RR42_RS15010 are separated by 59 nucleotidesRR42_RS15010 and RR42_RS15015 overlap by 4 nucleotidesRR42_RS15015 and RR42_RS15020 are separated by 358 nucleotides RR42_RS15005: RR42_RS15005 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,244,088 to 3,245,998 _RS15005 RR42_RS15010: RR42_RS15010 - geranyl transferase, at 3,246,058 to 3,246,987 _RS15010 RR42_RS15015: RR42_RS15015 - exodeoxyribonuclease VII small subunit, at 3,246,984 to 3,247,274 _RS15015 RR42_RS15020: RR42_RS15020 - (2Fe-2S)-binding protein, at 3,247,633 to 3,248,736 _RS15020 Position (kb) 3246 3247 3248Strain fitness (log2 ratio) -2 -1 0 1 2at 3247.109 kb on - strand, within RR42_RS15015at 3247.263 kb on - strandat 3247.462 kb on + strandat 3247.462 kb on + strandat 3247.463 kb on - strandat 3247.631 kb on + strandat 3247.632 kb on - strandat 3247.697 kb on - strandat 3247.697 kb on - strandat 3247.951 kb on + strand, within RR42_RS15020at 3247.952 kb on - strand, within RR42_RS15020at 3248.122 kb on + strand, within RR42_RS15020at 3248.122 kb on + strand, within RR42_RS15020at 3248.122 kb on + strand, within RR42_RS15020at 3248.158 kb on + strand, within RR42_RS15020at 3248.159 kb on - strand, within RR42_RS15020at 3248.159 kb on - strand, within RR42_RS15020at 3248.185 kb on + strand, within RR42_RS15020at 3248.186 kb on - strand, within RR42_RS15020at 3248.197 kb on + strand, within RR42_RS15020at 3248.197 kb on + strand, within RR42_RS15020at 3248.198 kb on - strand, within RR42_RS15020at 3248.198 kb on - strand, within RR42_RS15020

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
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3,247,109 - RR42_RS15015 0.43 +0.7
3,247,263 - -0.5
3,247,462 + +1.2
3,247,462 + +0.5
3,247,463 - -2.0
3,247,631 + -0.3
3,247,632 - -0.9
3,247,697 - -0.0
3,247,697 - +0.0
3,247,951 + RR42_RS15020 0.29 -0.7
3,247,952 - RR42_RS15020 0.29 -2.3
3,248,122 + RR42_RS15020 0.44 -0.3
3,248,122 + RR42_RS15020 0.44 -0.1
3,248,122 + RR42_RS15020 0.44 +1.3
3,248,158 + RR42_RS15020 0.48 -0.0
3,248,159 - RR42_RS15020 0.48 -0.2
3,248,159 - RR42_RS15020 0.48 +0.6
3,248,185 + RR42_RS15020 0.50 -0.2
3,248,186 - RR42_RS15020 0.50 +0.6
3,248,197 + RR42_RS15020 0.51 +2.7
3,248,197 + RR42_RS15020 0.51 +0.9
3,248,198 - RR42_RS15020 0.51 -1.1
3,248,198 - RR42_RS15020 0.51 +0.4

Or see this region's nucleotide sequence