Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11375 and RR42_RS11380 are separated by 113 nucleotides RR42_RS11380 and RR42_RS11385 are separated by 76 nucleotides RR42_RS11385 and RR42_RS11390 are separated by 67 nucleotides RR42_RS11390 and RR42_RS11395 are separated by 250 nucleotides
RR42_RS11375: RR42_RS11375 - peptidase S66, at 2,436,600 to 2,437,574
_RS11375
RR42_RS11380: RR42_RS11380 - hypothetical protein, at 2,437,688 to 2,438,197
_RS11380
RR42_RS11385: RR42_RS11385 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 2,438,274 to 2,438,750
_RS11385
RR42_RS11390: RR42_RS11390 - 7-cyano-7-deazaguanine reductase, at 2,438,818 to 2,439,465
_RS11390
RR42_RS11395: RR42_RS11395 - LysR family transcriptional regulator, at 2,439,716 to 2,440,621
_RS11395
Position (kb)
2438
2439 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2437.673 kb on + strand at 2437.674 kb on - strand at 2437.685 kb on + strand at 2437.685 kb on + strand at 2437.686 kb on - strand at 2437.686 kb on - strand at 2437.686 kb on - strand at 2438.167 kb on - strand at 2438.794 kb on - strand at 2438.967 kb on - strand, within RR42_RS11390 at 2439.276 kb on - strand, within RR42_RS11390 at 2439.437 kb on + strand at 2439.458 kb on + strand at 2439.476 kb on - strand at 2439.487 kb on - strand at 2439.493 kb on + strand at 2439.494 kb on - strand at 2439.494 kb on - strand at 2439.494 kb on - strand at 2439.494 kb on - strand at 2439.495 kb on + strand at 2439.495 kb on + strand at 2439.495 kb on + strand at 2439.496 kb on - strand at 2439.496 kb on - strand at 2439.671 kb on + strand at 2439.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 2,437,673 + -0.1 2,437,674 - -1.3 2,437,685 + -1.7 2,437,685 + -2.8 2,437,686 - +0.7 2,437,686 - +0.0 2,437,686 - +0.2 2,438,167 - -0.8 2,438,794 - -0.5 2,438,967 - RR42_RS11390 0.23 +0.2 2,439,276 - RR42_RS11390 0.71 -1.0 2,439,437 + +0.1 2,439,458 + -1.2 2,439,476 - -0.1 2,439,487 - -0.4 2,439,493 + +0.3 2,439,494 - +0.0 2,439,494 - +0.3 2,439,494 - -0.1 2,439,494 - +0.8 2,439,495 + -0.0 2,439,495 + +1.3 2,439,495 + -1.0 2,439,496 - -1.1 2,439,496 - -0.9 2,439,671 + -1.0 2,439,672 - -2.1
Or see this region's nucleotide sequence