Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09590

Experiment: R2A with Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09585 and RR42_RS09590 are separated by 176 nucleotidesRR42_RS09590 and RR42_RS09595 are separated by 547 nucleotides RR42_RS09585: RR42_RS09585 - Crp/Fnr family transcriptional regulator, at 2,029,605 to 2,030,363 _RS09585 RR42_RS09590: RR42_RS09590 - hypothetical protein, at 2,030,540 to 2,030,803 _RS09590 RR42_RS09595: RR42_RS09595 - histidine kinase, at 2,031,351 to 2,032,496 _RS09595 Position (kb) 2030 2031Strain fitness (log2 ratio) -2 -1 0 1at 2029.727 kb on - strand, within RR42_RS09585at 2029.805 kb on + strand, within RR42_RS09585at 2030.128 kb on + strand, within RR42_RS09585at 2030.129 kb on - strand, within RR42_RS09585at 2030.129 kb on - strand, within RR42_RS09585at 2030.351 kb on - strandat 2030.453 kb on + strandat 2030.454 kb on - strandat 2030.649 kb on + strand, within RR42_RS09590at 2030.649 kb on + strand, within RR42_RS09590at 2030.650 kb on - strand, within RR42_RS09590at 2030.981 kb on + strandat 2031.022 kb on + strandat 2031.022 kb on + strandat 2031.023 kb on - strandat 2031.178 kb on + strandat 2031.179 kb on - strandat 2031.179 kb on - strandat 2031.215 kb on + strandat 2031.216 kb on - strandat 2031.272 kb on + strandat 2031.273 kb on - strandat 2031.399 kb on - strandat 2031.650 kb on + strand, within RR42_RS09595

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
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2,029,727 - RR42_RS09585 0.16 -1.0
2,029,805 + RR42_RS09585 0.26 +0.2
2,030,128 + RR42_RS09585 0.69 +0.4
2,030,129 - RR42_RS09585 0.69 -0.9
2,030,129 - RR42_RS09585 0.69 -0.3
2,030,351 - +0.7
2,030,453 + -0.3
2,030,454 - +0.0
2,030,649 + RR42_RS09590 0.41 +0.8
2,030,649 + RR42_RS09590 0.41 +0.1
2,030,650 - RR42_RS09590 0.42 +0.6
2,030,981 + -0.4
2,031,022 + -0.0
2,031,022 + -2.5
2,031,023 - +0.2
2,031,178 + -1.5
2,031,179 - +0.5
2,031,179 - -0.5
2,031,215 + +0.0
2,031,216 - -0.1
2,031,272 + -0.5
2,031,273 - -0.8
2,031,399 - -1.2
2,031,650 + RR42_RS09595 0.26 -0.4

Or see this region's nucleotide sequence