Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08620 and RR42_RS08625 are separated by 14 nucleotides RR42_RS08625 and RR42_RS08630 overlap by 1 nucleotides RR42_RS08630 and RR42_RS08635 are separated by 95 nucleotides RR42_RS08635 and RR42_RS08640 overlap by 4 nucleotides
RR42_RS08620: RR42_RS08620 - membrane protein, at 1,808,118 to 1,808,507
_RS08620
RR42_RS08625: RR42_RS08625 - tail protein X, at 1,808,522 to 1,808,725
_RS08625
RR42_RS08630: RR42_RS08630 - head completion/stabilization protein, at 1,808,725 to 1,809,192
_RS08630
RR42_RS08635: RR42_RS08635 - terminase, at 1,809,288 to 1,810,010
_RS08635
RR42_RS08640: RR42_RS08640 - phage capsid protein, at 1,810,007 to 1,811,014
_RS08640
Position (kb) 1809
1810
1811 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1808.288 kb on - strand, within RR42_RS08620 at 1808.671 kb on - strand, within RR42_RS08625 at 1808.818 kb on + strand, within RR42_RS08630 at 1808.897 kb on + strand, within RR42_RS08630 at 1808.987 kb on + strand, within RR42_RS08630 at 1809.207 kb on - strand at 1809.541 kb on - strand, within RR42_RS08635 at 1809.688 kb on + strand, within RR42_RS08635 at 1809.689 kb on - strand, within RR42_RS08635 at 1809.689 kb on - strand, within RR42_RS08635 at 1810.065 kb on + strand at 1810.065 kb on + strand at 1810.066 kb on - strand at 1810.150 kb on - strand, within RR42_RS08640 at 1810.153 kb on - strand, within RR42_RS08640 at 1810.175 kb on - strand, within RR42_RS08640 at 1810.203 kb on + strand, within RR42_RS08640 at 1810.203 kb on + strand, within RR42_RS08640 at 1810.309 kb on - strand, within RR42_RS08640 at 1810.365 kb on + strand, within RR42_RS08640 at 1810.366 kb on - strand, within RR42_RS08640 at 1810.501 kb on + strand, within RR42_RS08640 at 1810.502 kb on - strand, within RR42_RS08640 at 1810.848 kb on + strand, within RR42_RS08640 at 1810.848 kb on + strand, within RR42_RS08640 at 1810.849 kb on - strand, within RR42_RS08640 at 1810.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 1,808,288 - RR42_RS08620 0.44 +0.8 1,808,671 - RR42_RS08625 0.73 -1.1 1,808,818 + RR42_RS08630 0.20 +0.3 1,808,897 + RR42_RS08630 0.37 -0.4 1,808,987 + RR42_RS08630 0.56 -0.1 1,809,207 - +0.3 1,809,541 - RR42_RS08635 0.35 +0.3 1,809,688 + RR42_RS08635 0.55 +0.2 1,809,689 - RR42_RS08635 0.55 +1.0 1,809,689 - RR42_RS08635 0.55 -0.4 1,810,065 + -0.6 1,810,065 + -3.1 1,810,066 - -0.7 1,810,150 - RR42_RS08640 0.14 -0.0 1,810,153 - RR42_RS08640 0.14 -0.7 1,810,175 - RR42_RS08640 0.17 -0.2 1,810,203 + RR42_RS08640 0.19 -1.1 1,810,203 + RR42_RS08640 0.19 -1.0 1,810,309 - RR42_RS08640 0.30 -1.2 1,810,365 + RR42_RS08640 0.36 +0.0 1,810,366 - RR42_RS08640 0.36 +0.1 1,810,501 + RR42_RS08640 0.49 +1.1 1,810,502 - RR42_RS08640 0.49 -0.0 1,810,848 + RR42_RS08640 0.83 -0.6 1,810,848 + RR42_RS08640 0.83 +0.0 1,810,849 - RR42_RS08640 0.84 -2.2 1,810,933 + -0.4
Or see this region's nucleotide sequence