Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07150

Experiment: R2A with Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07145 and RR42_RS07150 are separated by 27 nucleotidesRR42_RS07150 and RR42_RS07155 are separated by 72 nucleotidesRR42_RS07155 and RR42_RS07160 are separated by 59 nucleotides RR42_RS07145: RR42_RS07145 - hypothetical protein, at 1,530,968 to 1,532,830 _RS07145 RR42_RS07150: RR42_RS07150 - hypothetical protein, at 1,532,858 to 1,533,571 _RS07150 RR42_RS07155: RR42_RS07155 - hypothetical protein, at 1,533,644 to 1,534,405 _RS07155 RR42_RS07160: RR42_RS07160 - hypothetical protein, at 1,534,465 to 1,535,247 _RS07160 Position (kb) 1532 1533 1534Strain fitness (log2 ratio) -2 -1 0 1 2at 1531.884 kb on - strand, within RR42_RS07145at 1531.884 kb on - strand, within RR42_RS07145at 1531.937 kb on + strand, within RR42_RS07145at 1532.013 kb on - strand, within RR42_RS07145at 1532.457 kb on - strand, within RR42_RS07145at 1532.474 kb on + strand, within RR42_RS07145at 1532.475 kb on - strand, within RR42_RS07145at 1532.768 kb on + strandat 1532.857 kb on + strandat 1533.195 kb on - strand, within RR42_RS07150at 1533.633 kb on - strandat 1533.640 kb on - strandat 1533.640 kb on - strandat 1533.719 kb on + strandat 1533.720 kb on - strandat 1533.941 kb on - strand, within RR42_RS07155at 1534.281 kb on - strand, within RR42_RS07155at 1534.344 kb on - strandat 1534.429 kb on + strandat 1534.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
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1,531,884 - RR42_RS07145 0.49 -0.8
1,531,884 - RR42_RS07145 0.49 +0.7
1,531,937 + RR42_RS07145 0.52 -1.0
1,532,013 - RR42_RS07145 0.56 +0.7
1,532,457 - RR42_RS07145 0.80 -0.6
1,532,474 + RR42_RS07145 0.81 -0.5
1,532,475 - RR42_RS07145 0.81 +2.7
1,532,768 + -0.4
1,532,857 + +0.5
1,533,195 - RR42_RS07150 0.47 +0.5
1,533,633 - -0.1
1,533,640 - -0.5
1,533,640 - -1.0
1,533,719 + -0.6
1,533,720 - -0.5
1,533,941 - RR42_RS07155 0.39 +0.1
1,534,281 - RR42_RS07155 0.84 -1.1
1,534,344 - -2.7
1,534,429 + +0.8
1,534,462 - +0.5

Or see this region's nucleotide sequence