Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06735

Experiment: R2A with Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06725 and RR42_RS06730 are separated by 113 nucleotidesRR42_RS06730 and RR42_RS06735 overlap by 4 nucleotides RR42_RS06725: RR42_RS06725 - hypothetical protein, at 1,460,906 to 1,461,565 _RS06725 RR42_RS06730: RR42_RS06730 - hypothetical protein, at 1,461,679 to 1,462,515 _RS06730 RR42_RS06735: RR42_RS06735 - hypothetical protein, at 1,462,512 to 1,462,691 _RS06735 Position (kb) 1462 1463Strain fitness (log2 ratio) -2 -1 0 1at 1461.582 kb on - strandat 1461.582 kb on - strandat 1461.582 kb on - strandat 1461.681 kb on - strandat 1461.803 kb on + strand, within RR42_RS06730at 1461.803 kb on + strand, within RR42_RS06730at 1461.804 kb on - strand, within RR42_RS06730at 1461.944 kb on + strand, within RR42_RS06730at 1461.944 kb on + strand, within RR42_RS06730at 1461.945 kb on - strand, within RR42_RS06730at 1462.093 kb on - strand, within RR42_RS06730at 1462.154 kb on + strand, within RR42_RS06730at 1462.184 kb on + strand, within RR42_RS06730at 1462.185 kb on - strand, within RR42_RS06730at 1462.425 kb on - strand, within RR42_RS06730at 1462.529 kb on + strandat 1462.598 kb on + strand, within RR42_RS06735at 1462.903 kb on + strandat 1462.990 kb on - strandat 1462.990 kb on - strandat 1463.003 kb on + strandat 1463.007 kb on + strandat 1463.548 kb on - strandat 1463.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
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1,461,582 - -2.6
1,461,582 - -0.0
1,461,582 - +0.7
1,461,681 - -0.8
1,461,803 + RR42_RS06730 0.15 -0.3
1,461,803 + RR42_RS06730 0.15 -0.3
1,461,804 - RR42_RS06730 0.15 -1.2
1,461,944 + RR42_RS06730 0.32 +0.5
1,461,944 + RR42_RS06730 0.32 -0.2
1,461,945 - RR42_RS06730 0.32 -1.6
1,462,093 - RR42_RS06730 0.49 +0.6
1,462,154 + RR42_RS06730 0.57 +0.2
1,462,184 + RR42_RS06730 0.60 -0.1
1,462,185 - RR42_RS06730 0.60 -2.1
1,462,425 - RR42_RS06730 0.89 +0.1
1,462,529 + -1.7
1,462,598 + RR42_RS06735 0.48 +0.8
1,462,903 + +1.6
1,462,990 - +0.7
1,462,990 - +0.1
1,463,003 + -2.0
1,463,007 + -0.5
1,463,548 - -1.0
1,463,569 - +1.6

Or see this region's nucleotide sequence