Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06170

Experiment: R2A with Chloride 300 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS06160 and RR42_RS06165 are separated by 29 nucleotidesRR42_RS06165 and RR42_RS06170 are separated by 90 nucleotidesRR42_RS06170 and RR42_RS06175 are separated by 113 nucleotides RR42_RS06160: RR42_RS06160 - CTP synthase, at 1,353,529 to 1,355,181 _RS06160 RR42_RS06165: RR42_RS06165 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,355,211 to 1,356,083 _RS06165 RR42_RS06170: RR42_RS06170 - hypothetical protein, at 1,356,174 to 1,356,464 _RS06170 RR42_RS06175: RR42_RS06175 - enolase, at 1,356,578 to 1,357,867 _RS06175 Position (kb) 1356 1357Strain fitness (log2 ratio) -1 0 1at 1356.138 kb on + strandat 1356.152 kb on + strandat 1356.152 kb on + strandat 1356.152 kb on + strandat 1356.186 kb on + strandat 1356.187 kb on - strandat 1356.187 kb on - strandat 1356.187 kb on - strandat 1356.189 kb on - strandat 1356.234 kb on + strand, within RR42_RS06170at 1356.280 kb on + strand, within RR42_RS06170at 1356.280 kb on + strand, within RR42_RS06170at 1356.360 kb on + strand, within RR42_RS06170at 1356.360 kb on + strand, within RR42_RS06170at 1356.528 kb on + strandat 1356.531 kb on + strandat 1356.531 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
remove
1,356,138 + -0.1
1,356,152 + +0.1
1,356,152 + -0.4
1,356,152 + -0.9
1,356,186 + -0.7
1,356,187 - -1.4
1,356,187 - +0.5
1,356,187 - +0.9
1,356,189 - -0.2
1,356,234 + RR42_RS06170 0.21 +0.5
1,356,280 + RR42_RS06170 0.36 -0.5
1,356,280 + RR42_RS06170 0.36 +0.7
1,356,360 + RR42_RS06170 0.64 +0.9
1,356,360 + RR42_RS06170 0.64 +0.6
1,356,528 + -1.4
1,356,531 + -0.3
1,356,531 + +0.6

Or see this region's nucleotide sequence