Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04130 and RR42_RS04135 are separated by 79 nucleotides RR42_RS04135 and RR42_RS04140 are separated by 100 nucleotides
RR42_RS04130: RR42_RS04130 - secretin, at 912,536 to 914,383
_RS04130
RR42_RS04135: RR42_RS04135 - pilus assembly protein CpaB, at 914,463 to 915,311
_RS04135
RR42_RS04140: RR42_RS04140 - ATPase, at 915,412 to 916,770
_RS04140
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 913.747 kb on - strand, within RR42_RS04130 at 913.983 kb on + strand, within RR42_RS04130 at 913.984 kb on - strand, within RR42_RS04130 at 914.098 kb on + strand, within RR42_RS04130 at 914.099 kb on - strand, within RR42_RS04130 at 914.369 kb on - strand at 914.409 kb on + strand at 914.410 kb on - strand at 914.421 kb on - strand at 914.433 kb on + strand at 914.434 kb on - strand at 914.952 kb on + strand, within RR42_RS04135 at 915.442 kb on - strand at 915.866 kb on - strand, within RR42_RS04140 at 915.896 kb on + strand, within RR42_RS04140 at 915.896 kb on + strand, within RR42_RS04140 at 915.897 kb on - strand, within RR42_RS04140 at 915.897 kb on - strand, within RR42_RS04140 at 915.918 kb on + strand, within RR42_RS04140 at 915.918 kb on + strand, within RR42_RS04140 at 915.919 kb on - strand, within RR42_RS04140 at 915.935 kb on + strand, within RR42_RS04140 at 915.936 kb on - strand, within RR42_RS04140 at 916.125 kb on + strand, within RR42_RS04140 at 916.184 kb on + strand, within RR42_RS04140 at 916.184 kb on + strand, within RR42_RS04140 at 916.185 kb on - strand, within RR42_RS04140 at 916.211 kb on + strand, within RR42_RS04140 at 916.212 kb on - strand, within RR42_RS04140 at 916.302 kb on + strand, within RR42_RS04140 at 916.303 kb on - strand, within RR42_RS04140
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 913,747 - RR42_RS04130 0.66 -0.4 913,983 + RR42_RS04130 0.78 -0.6 913,984 - RR42_RS04130 0.78 -0.8 914,098 + RR42_RS04130 0.85 -0.0 914,099 - RR42_RS04130 0.85 -0.8 914,369 - +1.2 914,409 + -0.8 914,410 - +0.4 914,421 - +0.3 914,433 + -0.9 914,434 - -1.0 914,952 + RR42_RS04135 0.58 +0.5 915,442 - +0.1 915,866 - RR42_RS04140 0.33 -0.2 915,896 + RR42_RS04140 0.36 -0.7 915,896 + RR42_RS04140 0.36 +0.1 915,897 - RR42_RS04140 0.36 -0.2 915,897 - RR42_RS04140 0.36 -0.4 915,918 + RR42_RS04140 0.37 -0.7 915,918 + RR42_RS04140 0.37 +0.1 915,919 - RR42_RS04140 0.37 -0.5 915,935 + RR42_RS04140 0.38 -1.4 915,936 - RR42_RS04140 0.39 +0.1 916,125 + RR42_RS04140 0.52 -0.1 916,184 + RR42_RS04140 0.57 -1.1 916,184 + RR42_RS04140 0.57 -0.5 916,185 - RR42_RS04140 0.57 -0.5 916,211 + RR42_RS04140 0.59 -2.8 916,212 - RR42_RS04140 0.59 -1.0 916,302 + RR42_RS04140 0.65 +1.0 916,303 - RR42_RS04140 0.66 +0.5
Or see this region's nucleotide sequence