Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02665

Experiment: R2A with Chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02660 and RR42_RS02665 are separated by 23 nucleotidesRR42_RS02665 and RR42_RS02670 are separated by 229 nucleotides RR42_RS02660: RR42_RS02660 - anhydro-N-acetylmuramic acid kinase, at 594,095 to 595,237 _RS02660 RR42_RS02665: RR42_RS02665 - peptidase, at 595,261 to 596,640 _RS02665 RR42_RS02670: RR42_RS02670 - tyrosyl-tRNA synthetase, at 596,870 to 598,111 _RS02670 Position (kb) 595 596 597Strain fitness (log2 ratio) -3 -2 -1 0 1at 594.510 kb on + strand, within RR42_RS02660at 594.511 kb on - strand, within RR42_RS02660at 594.585 kb on + strand, within RR42_RS02660at 594.615 kb on + strand, within RR42_RS02660at 594.615 kb on + strand, within RR42_RS02660at 594.616 kb on - strand, within RR42_RS02660at 594.892 kb on - strand, within RR42_RS02660at 594.906 kb on + strand, within RR42_RS02660at 595.011 kb on + strand, within RR42_RS02660at 595.012 kb on - strand, within RR42_RS02660at 595.286 kb on + strandat 595.286 kb on + strandat 595.287 kb on - strandat 595.287 kb on - strandat 595.287 kb on - strandat 595.287 kb on - strandat 595.312 kb on - strandat 595.328 kb on + strandat 595.328 kb on + strandat 595.328 kb on + strandat 595.329 kb on - strandat 595.329 kb on - strandat 595.329 kb on - strandat 595.329 kb on - strandat 595.329 kb on - strandat 595.329 kb on - strandat 595.329 kb on - strandat 595.428 kb on - strand, within RR42_RS02665at 595.428 kb on - strand, within RR42_RS02665at 595.470 kb on - strand, within RR42_RS02665at 595.538 kb on + strand, within RR42_RS02665at 595.538 kb on + strand, within RR42_RS02665at 595.538 kb on + strand, within RR42_RS02665at 595.538 kb on + strand, within RR42_RS02665at 595.539 kb on - strand, within RR42_RS02665at 595.539 kb on - strand, within RR42_RS02665at 595.539 kb on - strand, within RR42_RS02665at 595.539 kb on - strand, within RR42_RS02665at 595.539 kb on - strand, within RR42_RS02665at 595.541 kb on + strand, within RR42_RS02665at 595.541 kb on + strand, within RR42_RS02665at 595.541 kb on + strand, within RR42_RS02665at 595.542 kb on - strand, within RR42_RS02665at 595.542 kb on - strand, within RR42_RS02665at 595.542 kb on - strand, within RR42_RS02665at 595.542 kb on - strand, within RR42_RS02665at 595.551 kb on - strand, within RR42_RS02665at 595.557 kb on + strand, within RR42_RS02665at 595.558 kb on - strand, within RR42_RS02665at 595.581 kb on + strand, within RR42_RS02665at 595.651 kb on - strand, within RR42_RS02665at 595.651 kb on - strand, within RR42_RS02665at 595.651 kb on - strand, within RR42_RS02665at 595.651 kb on - strand, within RR42_RS02665at 595.793 kb on + strand, within RR42_RS02665at 595.793 kb on + strand, within RR42_RS02665at 595.794 kb on - strand, within RR42_RS02665at 595.794 kb on - strand, within RR42_RS02665at 595.794 kb on - strand, within RR42_RS02665at 595.794 kb on - strand, within RR42_RS02665at 595.794 kb on - strand, within RR42_RS02665at 595.794 kb on - strand, within RR42_RS02665at 595.796 kb on + strand, within RR42_RS02665at 595.796 kb on + strand, within RR42_RS02665at 595.796 kb on + strand, within RR42_RS02665at 595.796 kb on + strand, within RR42_RS02665at 595.797 kb on - strand, within RR42_RS02665at 595.826 kb on + strand, within RR42_RS02665at 595.876 kb on + strand, within RR42_RS02665at 595.923 kb on - strand, within RR42_RS02665at 596.120 kb on + strand, within RR42_RS02665at 596.120 kb on + strand, within RR42_RS02665at 596.121 kb on - strand, within RR42_RS02665at 596.121 kb on - strand, within RR42_RS02665at 596.388 kb on + strand, within RR42_RS02665at 596.388 kb on + strand, within RR42_RS02665at 596.389 kb on - strand, within RR42_RS02665at 596.425 kb on + strand, within RR42_RS02665at 596.426 kb on - strand, within RR42_RS02665at 596.426 kb on - strand, within RR42_RS02665at 596.440 kb on + strand, within RR42_RS02665at 596.485 kb on - strand, within RR42_RS02665at 596.485 kb on - strand, within RR42_RS02665at 596.533 kb on - strandat 596.583 kb on + strandat 596.583 kb on + strandat 596.584 kb on - strandat 596.584 kb on - strandat 596.747 kb on + strandat 596.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
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594,510 + RR42_RS02660 0.36 -0.9
594,511 - RR42_RS02660 0.36 +0.3
594,585 + RR42_RS02660 0.43 +0.0
594,615 + RR42_RS02660 0.45 -0.2
594,615 + RR42_RS02660 0.45 +1.0
594,616 - RR42_RS02660 0.46 +1.3
594,892 - RR42_RS02660 0.70 +1.0
594,906 + RR42_RS02660 0.71 +0.7
595,011 + RR42_RS02660 0.80 +0.2
595,012 - RR42_RS02660 0.80 +0.7
595,286 + -1.7
595,286 + +0.3
595,287 - -1.7
595,287 - -2.4
595,287 - -0.2
595,287 - -2.7
595,312 - -1.2
595,328 + -1.8
595,328 + -1.9
595,328 + -2.0
595,329 - -2.1
595,329 - -0.7
595,329 - -0.2
595,329 - -2.3
595,329 - +0.8
595,329 - -2.3
595,329 - -0.2
595,428 - RR42_RS02665 0.12 -2.1
595,428 - RR42_RS02665 0.12 +0.2
595,470 - RR42_RS02665 0.15 -0.8
595,538 + RR42_RS02665 0.20 -1.7
595,538 + RR42_RS02665 0.20 -1.5
595,538 + RR42_RS02665 0.20 -1.8
595,538 + RR42_RS02665 0.20 -1.0
595,539 - RR42_RS02665 0.20 -2.3
595,539 - RR42_RS02665 0.20 -0.7
595,539 - RR42_RS02665 0.20 -0.9
595,539 - RR42_RS02665 0.20 -1.7
595,539 - RR42_RS02665 0.20 -3.3
595,541 + RR42_RS02665 0.20 -1.2
595,541 + RR42_RS02665 0.20 -1.3
595,541 + RR42_RS02665 0.20 -3.3
595,542 - RR42_RS02665 0.20 -1.5
595,542 - RR42_RS02665 0.20 -2.1
595,542 - RR42_RS02665 0.20 -1.7
595,542 - RR42_RS02665 0.20 -1.3
595,551 - RR42_RS02665 0.21 -1.1
595,557 + RR42_RS02665 0.21 +0.6
595,558 - RR42_RS02665 0.22 -2.1
595,581 + RR42_RS02665 0.23 -0.6
595,651 - RR42_RS02665 0.28 -2.2
595,651 - RR42_RS02665 0.28 +0.0
595,651 - RR42_RS02665 0.28 -0.3
595,651 - RR42_RS02665 0.28 -0.9
595,793 + RR42_RS02665 0.39 -1.0
595,793 + RR42_RS02665 0.39 -1.8
595,794 - RR42_RS02665 0.39 -1.5
595,794 - RR42_RS02665 0.39 -2.1
595,794 - RR42_RS02665 0.39 -1.1
595,794 - RR42_RS02665 0.39 -1.7
595,794 - RR42_RS02665 0.39 -0.5
595,794 - RR42_RS02665 0.39 -1.3
595,796 + RR42_RS02665 0.39 -2.7
595,796 + RR42_RS02665 0.39 -2.4
595,796 + RR42_RS02665 0.39 -1.0
595,796 + RR42_RS02665 0.39 -2.0
595,797 - RR42_RS02665 0.39 -2.3
595,826 + RR42_RS02665 0.41 -1.6
595,876 + RR42_RS02665 0.45 -0.8
595,923 - RR42_RS02665 0.48 -2.4
596,120 + RR42_RS02665 0.62 -1.6
596,120 + RR42_RS02665 0.62 -3.5
596,121 - RR42_RS02665 0.62 -1.1
596,121 - RR42_RS02665 0.62 -0.7
596,388 + RR42_RS02665 0.82 -1.8
596,388 + RR42_RS02665 0.82 -1.3
596,389 - RR42_RS02665 0.82 -0.1
596,425 + RR42_RS02665 0.84 -1.4
596,426 - RR42_RS02665 0.84 -0.3
596,426 - RR42_RS02665 0.84 -3.3
596,440 + RR42_RS02665 0.85 -1.5
596,485 - RR42_RS02665 0.89 -1.8
596,485 - RR42_RS02665 0.89 -3.0
596,533 - -2.3
596,583 + -1.0
596,583 + -1.2
596,584 - -1.9
596,584 - -0.5
596,747 + -1.4
596,748 - +0.1

Or see this region's nucleotide sequence