Experiment: R2A with Chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02455 and RR42_RS02460 are separated by 129 nucleotides RR42_RS02460 and RR42_RS02465 are separated by 201 nucleotides
RR42_RS02455: RR42_RS02455 - agmatinase, at 552,763 to 553,749
_RS02455
RR42_RS02460: RR42_RS02460 - LysR family transcriptional regulator, at 553,879 to 554,775
_RS02460
RR42_RS02465: RR42_RS02465 - membrane protein, at 554,977 to 555,864
_RS02465
Position (kb) 553
554
555 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.914 kb on - strand, within RR42_RS02455 at 552.914 kb on - strand, within RR42_RS02455 at 552.914 kb on - strand, within RR42_RS02455 at 552.977 kb on + strand, within RR42_RS02455 at 552.977 kb on + strand, within RR42_RS02455 at 553.013 kb on + strand, within RR42_RS02455 at 553.014 kb on - strand, within RR42_RS02455 at 553.508 kb on + strand, within RR42_RS02455 at 553.508 kb on + strand, within RR42_RS02455 at 553.509 kb on - strand, within RR42_RS02455 at 553.738 kb on - strand at 553.741 kb on + strand at 553.741 kb on + strand at 553.829 kb on - strand at 553.829 kb on - strand at 554.199 kb on + strand, within RR42_RS02460 at 554.199 kb on + strand, within RR42_RS02460 at 554.200 kb on - strand, within RR42_RS02460 at 554.200 kb on - strand, within RR42_RS02460 at 554.347 kb on + strand, within RR42_RS02460 at 554.378 kb on - strand, within RR42_RS02460 at 554.378 kb on - strand, within RR42_RS02460 at 554.378 kb on - strand, within RR42_RS02460 at 554.410 kb on + strand, within RR42_RS02460 at 554.411 kb on - strand, within RR42_RS02460 at 554.498 kb on - strand, within RR42_RS02460 at 554.559 kb on + strand, within RR42_RS02460 at 554.605 kb on + strand, within RR42_RS02460 at 554.605 kb on + strand, within RR42_RS02460 at 554.605 kb on + strand, within RR42_RS02460 at 554.605 kb on + strand, within RR42_RS02460 at 554.680 kb on + strand, within RR42_RS02460 at 554.681 kb on - strand, within RR42_RS02460 at 554.687 kb on + strand at 554.688 kb on - strand at 554.875 kb on + strand at 554.918 kb on - strand at 554.919 kb on + strand at 554.990 kb on + strand at 554.991 kb on - strand at 555.433 kb on + strand, within RR42_RS02465 at 555.433 kb on + strand, within RR42_RS02465 at 555.433 kb on + strand, within RR42_RS02465 at 555.433 kb on + strand, within RR42_RS02465 at 555.433 kb on + strand, within RR42_RS02465 at 555.434 kb on - strand, within RR42_RS02465 at 555.434 kb on - strand, within RR42_RS02465 at 555.516 kb on + strand, within RR42_RS02465 at 555.516 kb on + strand, within RR42_RS02465 at 555.598 kb on + strand, within RR42_RS02465 at 555.623 kb on - strand, within RR42_RS02465 at 555.623 kb on - strand, within RR42_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM remove 552,913 + RR42_RS02455 0.15 -0.4 552,913 + RR42_RS02455 0.15 +0.2 552,913 + RR42_RS02455 0.15 +0.1 552,913 + RR42_RS02455 0.15 -0.0 552,913 + RR42_RS02455 0.15 -1.2 552,913 + RR42_RS02455 0.15 +1.6 552,914 - RR42_RS02455 0.15 +0.6 552,914 - RR42_RS02455 0.15 +0.3 552,914 - RR42_RS02455 0.15 +1.9 552,977 + RR42_RS02455 0.22 +0.8 552,977 + RR42_RS02455 0.22 -1.7 553,013 + RR42_RS02455 0.25 +2.8 553,014 - RR42_RS02455 0.25 -1.6 553,508 + RR42_RS02455 0.75 -1.7 553,508 + RR42_RS02455 0.75 +0.6 553,509 - RR42_RS02455 0.76 -0.4 553,738 - +0.3 553,741 + +0.1 553,741 + -1.6 553,829 - +0.3 553,829 - +1.3 554,199 + RR42_RS02460 0.36 +0.2 554,199 + RR42_RS02460 0.36 +0.9 554,200 - RR42_RS02460 0.36 +1.2 554,200 - RR42_RS02460 0.36 +0.1 554,347 + RR42_RS02460 0.52 +0.2 554,378 - RR42_RS02460 0.56 -0.4 554,378 - RR42_RS02460 0.56 +0.8 554,378 - RR42_RS02460 0.56 -0.4 554,410 + RR42_RS02460 0.59 +0.5 554,411 - RR42_RS02460 0.59 +1.8 554,498 - RR42_RS02460 0.69 -0.0 554,559 + RR42_RS02460 0.76 +1.1 554,605 + RR42_RS02460 0.81 -0.1 554,605 + RR42_RS02460 0.81 +1.8 554,605 + RR42_RS02460 0.81 +0.8 554,605 + RR42_RS02460 0.81 +0.6 554,680 + RR42_RS02460 0.89 -0.7 554,681 - RR42_RS02460 0.89 +0.7 554,687 + +0.2 554,688 - +0.2 554,875 + +1.1 554,918 - +1.9 554,919 + -2.2 554,990 + -1.2 554,991 - +0.3 555,433 + RR42_RS02465 0.51 +0.3 555,433 + RR42_RS02465 0.51 -0.4 555,433 + RR42_RS02465 0.51 -0.2 555,433 + RR42_RS02465 0.51 -0.2 555,433 + RR42_RS02465 0.51 -0.2 555,434 - RR42_RS02465 0.51 +0.4 555,434 - RR42_RS02465 0.51 +0.5 555,516 + RR42_RS02465 0.61 +0.7 555,516 + RR42_RS02465 0.61 +0.6 555,598 + RR42_RS02465 0.70 +0.2 555,623 - RR42_RS02465 0.73 +1.4 555,623 - RR42_RS02465 0.73 +0.7
Or see this region's nucleotide sequence