Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00730

Experiment: R2A with Chloride 300 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS00725 and RR42_RS00730 are separated by 69 nucleotidesRR42_RS00730 and RR42_RS00735 are separated by 265 nucleotides RR42_RS00725: RR42_RS00725 - hypothetical protein, at 183,138 to 184,046 _RS00725 RR42_RS00730: RR42_RS00730 - enoyl-CoA hydratase, at 184,116 to 184,934 _RS00730 RR42_RS00735: RR42_RS00735 - fumarylacetoacetate hydrolase, at 185,200 to 186,183 _RS00735 Position (kb) 184 185Strain fitness (log2 ratio) -2 -1 0 1at 183.159 kb on - strandat 183.450 kb on - strand, within RR42_RS00725at 183.657 kb on - strand, within RR42_RS00725at 183.657 kb on - strand, within RR42_RS00725at 183.706 kb on + strand, within RR42_RS00725at 183.706 kb on + strand, within RR42_RS00725at 183.707 kb on - strand, within RR42_RS00725at 184.108 kb on + strandat 184.108 kb on + strandat 184.109 kb on - strandat 184.109 kb on - strandat 184.109 kb on - strandat 184.109 kb on - strandat 184.155 kb on + strandat 184.156 kb on - strandat 184.244 kb on + strand, within RR42_RS00730at 184.245 kb on - strand, within RR42_RS00730at 184.255 kb on + strand, within RR42_RS00730at 184.255 kb on + strand, within RR42_RS00730at 184.256 kb on - strand, within RR42_RS00730at 184.256 kb on - strand, within RR42_RS00730at 184.256 kb on - strand, within RR42_RS00730at 184.408 kb on + strand, within RR42_RS00730at 184.408 kb on + strand, within RR42_RS00730at 184.408 kb on + strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.409 kb on - strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.411 kb on + strand, within RR42_RS00730at 184.412 kb on - strand, within RR42_RS00730at 184.412 kb on - strand, within RR42_RS00730at 184.412 kb on - strand, within RR42_RS00730at 184.487 kb on + strand, within RR42_RS00730at 184.487 kb on + strand, within RR42_RS00730at 184.530 kb on - strand, within RR42_RS00730at 184.530 kb on - strand, within RR42_RS00730at 184.530 kb on - strand, within RR42_RS00730at 184.618 kb on + strand, within RR42_RS00730at 184.618 kb on + strand, within RR42_RS00730at 184.619 kb on - strand, within RR42_RS00730at 184.619 kb on - strand, within RR42_RS00730at 184.619 kb on - strand, within RR42_RS00730at 184.799 kb on + strand, within RR42_RS00730at 184.799 kb on + strand, within RR42_RS00730at 184.800 kb on - strand, within RR42_RS00730at 185.360 kb on + strand, within RR42_RS00735at 185.440 kb on - strand, within RR42_RS00735at 185.440 kb on - strand, within RR42_RS00735at 185.585 kb on - strand, within RR42_RS00735at 185.585 kb on - strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.668 kb on + strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.669 kb on - strand, within RR42_RS00735at 185.803 kb on - strand, within RR42_RS00735at 185.843 kb on + strand, within RR42_RS00735at 185.843 kb on + strand, within RR42_RS00735at 185.843 kb on + strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735at 185.844 kb on - strand, within RR42_RS00735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloride 300 mM
remove
183,159 - +0.1
183,450 - RR42_RS00725 0.34 +0.6
183,657 - RR42_RS00725 0.57 -1.0
183,657 - RR42_RS00725 0.57 -2.4
183,706 + RR42_RS00725 0.62 -1.4
183,706 + RR42_RS00725 0.62 -0.9
183,707 - RR42_RS00725 0.63 +0.8
184,108 + -2.0
184,108 + +0.4
184,109 - -0.1
184,109 - +0.5
184,109 - +0.1
184,109 - -0.7
184,155 + -0.9
184,156 - +0.5
184,244 + RR42_RS00730 0.16 +1.2
184,245 - RR42_RS00730 0.16 +0.9
184,255 + RR42_RS00730 0.17 -1.0
184,255 + RR42_RS00730 0.17 +0.3
184,256 - RR42_RS00730 0.17 -1.0
184,256 - RR42_RS00730 0.17 +0.5
184,256 - RR42_RS00730 0.17 -0.2
184,408 + RR42_RS00730 0.36 -0.5
184,408 + RR42_RS00730 0.36 -1.2
184,408 + RR42_RS00730 0.36 -1.3
184,409 - RR42_RS00730 0.36 +0.5
184,409 - RR42_RS00730 0.36 -0.5
184,409 - RR42_RS00730 0.36 +0.4
184,409 - RR42_RS00730 0.36 +0.2
184,411 + RR42_RS00730 0.36 +1.6
184,411 + RR42_RS00730 0.36 -0.6
184,411 + RR42_RS00730 0.36 +0.3
184,411 + RR42_RS00730 0.36 -0.3
184,411 + RR42_RS00730 0.36 +0.4
184,411 + RR42_RS00730 0.36 +0.8
184,411 + RR42_RS00730 0.36 +1.7
184,411 + RR42_RS00730 0.36 -1.5
184,412 - RR42_RS00730 0.36 +0.8
184,412 - RR42_RS00730 0.36 -0.2
184,412 - RR42_RS00730 0.36 +0.5
184,487 + RR42_RS00730 0.45 -0.1
184,487 + RR42_RS00730 0.45 +0.2
184,530 - RR42_RS00730 0.51 -0.5
184,530 - RR42_RS00730 0.51 -0.3
184,530 - RR42_RS00730 0.51 +0.2
184,618 + RR42_RS00730 0.61 -0.4
184,618 + RR42_RS00730 0.61 -0.5
184,619 - RR42_RS00730 0.61 -1.2
184,619 - RR42_RS00730 0.61 +0.2
184,619 - RR42_RS00730 0.61 -0.9
184,799 + RR42_RS00730 0.83 -1.6
184,799 + RR42_RS00730 0.83 +0.1
184,800 - RR42_RS00730 0.84 +0.0
185,360 + RR42_RS00735 0.16 +0.2
185,440 - RR42_RS00735 0.24 +0.1
185,440 - RR42_RS00735 0.24 -0.7
185,585 - RR42_RS00735 0.39 +0.4
185,585 - RR42_RS00735 0.39 +0.2
185,668 + RR42_RS00735 0.48 +1.2
185,668 + RR42_RS00735 0.48 -1.6
185,668 + RR42_RS00735 0.48 -1.4
185,668 + RR42_RS00735 0.48 +0.2
185,668 + RR42_RS00735 0.48 +0.2
185,669 - RR42_RS00735 0.48 +0.1
185,669 - RR42_RS00735 0.48 +0.8
185,669 - RR42_RS00735 0.48 -0.1
185,669 - RR42_RS00735 0.48 +0.8
185,803 - RR42_RS00735 0.61 +1.1
185,843 + RR42_RS00735 0.65 -1.2
185,843 + RR42_RS00735 0.65 +0.1
185,843 + RR42_RS00735 0.65 +1.4
185,844 - RR42_RS00735 0.65 +0.6
185,844 - RR42_RS00735 0.65 -1.2
185,844 - RR42_RS00735 0.65 -1.2
185,844 - RR42_RS00735 0.65 -0.5

Or see this region's nucleotide sequence