Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5109

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5108 and Pf1N1B4_5109 are separated by 244 nucleotidesPf1N1B4_5109 and Pf1N1B4_5110 are separated by 999 nucleotides Pf1N1B4_5108 - Capsule biosynthesis protein capA, at 5,663,717 to 5,664,829 _5108 Pf1N1B4_5109 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 5,665,074 to 5,666,813 _5109 Pf1N1B4_5110 - hypothetical protein, at 5,667,813 to 5,669,792 _5110 Position (kb) 5665 5666 5667Strain fitness (log2 ratio) -1 0 1at 5664.137 kb on - strand, within Pf1N1B4_5108at 5664.493 kb on - strand, within Pf1N1B4_5108at 5664.493 kb on - strand, within Pf1N1B4_5108at 5664.636 kb on - strand, within Pf1N1B4_5108at 5664.636 kb on - strand, within Pf1N1B4_5108at 5664.809 kb on - strandat 5664.827 kb on + strandat 5664.828 kb on - strandat 5664.984 kb on - strandat 5665.356 kb on + strand, within Pf1N1B4_5109at 5665.593 kb on - strand, within Pf1N1B4_5109at 5665.687 kb on - strand, within Pf1N1B4_5109at 5665.864 kb on - strand, within Pf1N1B4_5109at 5666.706 kb on + strandat 5667.166 kb on + strandat 5667.362 kb on + strandat 5667.707 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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5,664,137 - Pf1N1B4_5108 0.38 -0.4
5,664,493 - Pf1N1B4_5108 0.70 -0.2
5,664,493 - Pf1N1B4_5108 0.70 +0.4
5,664,636 - Pf1N1B4_5108 0.83 -0.8
5,664,636 - Pf1N1B4_5108 0.83 +0.2
5,664,809 - -1.4
5,664,827 + -0.6
5,664,828 - -0.6
5,664,984 - +0.4
5,665,356 + Pf1N1B4_5109 0.16 -1.6
5,665,593 - Pf1N1B4_5109 0.30 +0.9
5,665,687 - Pf1N1B4_5109 0.35 +0.0
5,665,864 - Pf1N1B4_5109 0.45 +0.4
5,666,706 + -1.6
5,667,166 + +1.4
5,667,362 + -0.6
5,667,707 + -0.6

Or see this region's nucleotide sequence