Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4855

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4854 and Pf1N1B4_4855 are separated by 6 nucleotidesPf1N1B4_4855 and Pf1N1B4_4856 are separated by 260 nucleotides Pf1N1B4_4854 - hypothetical protein, at 5,364,393 to 5,366,735 _4854 Pf1N1B4_4855 - Response regulator, at 5,366,742 to 5,367,110 _4855 Pf1N1B4_4856 - Signal transduction histidine kinase, at 5,367,371 to 5,370,862 _4856 Position (kb) 5366 5367 5368Strain fitness (log2 ratio) -1 0 1 2at 5365.847 kb on + strand, within Pf1N1B4_4854at 5365.847 kb on + strand, within Pf1N1B4_4854at 5365.904 kb on + strand, within Pf1N1B4_4854at 5366.226 kb on + strand, within Pf1N1B4_4854at 5366.283 kb on + strandat 5366.322 kb on + strand, within Pf1N1B4_4854at 5366.322 kb on + strand, within Pf1N1B4_4854at 5366.339 kb on - strandat 5366.391 kb on + strandat 5366.391 kb on + strand, within Pf1N1B4_4854at 5366.391 kb on + strand, within Pf1N1B4_4854at 5366.391 kb on + strand, within Pf1N1B4_4854at 5366.391 kb on + strand, within Pf1N1B4_4854at 5366.392 kb on - strandat 5366.935 kb on - strand, within Pf1N1B4_4855at 5366.959 kb on + strand, within Pf1N1B4_4855at 5367.084 kb on + strandat 5367.110 kb on + strandat 5367.110 kb on + strandat 5367.111 kb on - strandat 5367.271 kb on + strandat 5367.272 kb on - strandat 5367.752 kb on + strand, within Pf1N1B4_4856

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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5,365,847 + Pf1N1B4_4854 0.62 +0.4
5,365,847 + Pf1N1B4_4854 0.62 +0.2
5,365,904 + Pf1N1B4_4854 0.64 +0.9
5,366,226 + Pf1N1B4_4854 0.78 +1.0
5,366,283 + -0.6
5,366,322 + Pf1N1B4_4854 0.82 -1.0
5,366,322 + Pf1N1B4_4854 0.82 +0.7
5,366,339 - +1.0
5,366,391 + -1.6
5,366,391 + Pf1N1B4_4854 0.85 -0.1
5,366,391 + Pf1N1B4_4854 0.85 +0.6
5,366,391 + Pf1N1B4_4854 0.85 -0.0
5,366,391 + Pf1N1B4_4854 0.85 +0.2
5,366,392 - -0.6
5,366,935 - Pf1N1B4_4855 0.52 +0.9
5,366,959 + Pf1N1B4_4855 0.59 +0.2
5,367,084 + +1.8
5,367,110 + +2.3
5,367,110 + +1.5
5,367,111 - +0.1
5,367,271 + -0.8
5,367,272 - -0.3
5,367,752 + Pf1N1B4_4856 0.11 +0.4

Or see this region's nucleotide sequence