Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4521

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4519 and Pf1N1B4_4520 are separated by 40 nucleotidesPf1N1B4_4520 and Pf1N1B4_4521 are separated by 2 nucleotidesPf1N1B4_4521 and Pf1N1B4_4522 are separated by 140 nucleotidesPf1N1B4_4522 and Pf1N1B4_4523 are separated by 3 nucleotides Pf1N1B4_4519 - Beta-ureidopropionase (EC 3.5.1.6), at 4,983,311 to 4,984,594 _4519 Pf1N1B4_4520 - GENE II AND X PROTEINS, at 4,984,635 to 4,985,048 _4520 Pf1N1B4_4521 - Probable transmembrane protein, at 4,985,051 to 4,985,485 _4521 Pf1N1B4_4522 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 4,985,626 to 4,986,060 _4522 Pf1N1B4_4523 - RNA polymerase sigma-70 factor, ECF subfamily, at 4,986,064 to 4,986,957 _4523 Position (kb) 4985 4986Strain fitness (log2 ratio) -2 -1 0 1 2at 4984.146 kb on - strand, within Pf1N1B4_4519at 4985.265 kb on - strand, within Pf1N1B4_4521at 4985.269 kb on - strandat 4985.269 kb on - strand, within Pf1N1B4_4521at 4985.269 kb on - strand, within Pf1N1B4_4521at 4985.269 kb on - strand, within Pf1N1B4_4521at 4985.300 kb on + strand, within Pf1N1B4_4521at 4985.301 kb on - strand, within Pf1N1B4_4521at 4985.518 kb on - strandat 4985.966 kb on + strand, within Pf1N1B4_4522at 4985.966 kb on + strand, within Pf1N1B4_4522at 4986.285 kb on + strand, within Pf1N1B4_4523at 4986.285 kb on + strand, within Pf1N1B4_4523at 4986.301 kb on + strand, within Pf1N1B4_4523

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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4,984,146 - Pf1N1B4_4519 0.65 -0.4
4,985,265 - Pf1N1B4_4521 0.49 +1.9
4,985,269 - -0.4
4,985,269 - Pf1N1B4_4521 0.50 -0.0
4,985,269 - Pf1N1B4_4521 0.50 +0.3
4,985,269 - Pf1N1B4_4521 0.50 +1.1
4,985,300 + Pf1N1B4_4521 0.57 +1.1
4,985,301 - Pf1N1B4_4521 0.57 +0.6
4,985,518 - -0.4
4,985,966 + Pf1N1B4_4522 0.78 -0.4
4,985,966 + Pf1N1B4_4522 0.78 -0.4
4,986,285 + Pf1N1B4_4523 0.25 -2.0
4,986,285 + Pf1N1B4_4523 0.25 -1.4
4,986,301 + Pf1N1B4_4523 0.27 +0.1

Or see this region's nucleotide sequence