Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4337

Experiment: L-Isoleucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4336 and Pf1N1B4_4337 are separated by 94 nucleotidesPf1N1B4_4337 and Pf1N1B4_4338 are separated by 105 nucleotides Pf1N1B4_4336 - FMN-dependent NADH-azoreductase, at 4,795,252 to 4,795,893 _4336 Pf1N1B4_4337 - Transcriptional regulator, at 4,795,988 to 4,796,842 _4337 Pf1N1B4_4338 - Mobile element protein, at 4,796,948 to 4,797,976 _4338 Position (kb) 4795 4796 4797Strain fitness (log2 ratio) -1 0 1 2at 4795.190 kb on - strandat 4795.190 kb on - strandat 4795.190 kb on - strandat 4795.195 kb on - strandat 4795.197 kb on - strandat 4795.266 kb on + strandat 4795.267 kb on - strandat 4795.267 kb on - strandat 4795.267 kb on - strandat 4795.400 kb on + strandat 4795.469 kb on + strand, within Pf1N1B4_4336at 4795.469 kb on + strand, within Pf1N1B4_4336at 4795.470 kb on - strand, within Pf1N1B4_4336at 4795.470 kb on - strand, within Pf1N1B4_4336at 4795.580 kb on + strandat 4795.580 kb on + strand, within Pf1N1B4_4336at 4795.759 kb on - strandat 4795.809 kb on - strandat 4796.007 kb on + strandat 4796.140 kb on + strand, within Pf1N1B4_4337at 4796.141 kb on - strand, within Pf1N1B4_4337at 4796.189 kb on + strand, within Pf1N1B4_4337at 4796.189 kb on + strandat 4796.603 kb on - strand, within Pf1N1B4_4337at 4796.709 kb on + strand, within Pf1N1B4_4337at 4796.710 kb on - strand, within Pf1N1B4_4337at 4796.710 kb on - strand, within Pf1N1B4_4337at 4796.819 kb on + strandat 4796.819 kb on + strandat 4796.819 kb on + strandat 4796.819 kb on + strandat 4796.820 kb on - strandat 4796.820 kb on - strandat 4796.864 kb on + strandat 4796.864 kb on + strandat 4796.864 kb on + strandat 4796.864 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
remove
4,795,190 - -1.1
4,795,190 - -0.8
4,795,190 - -0.8
4,795,195 - -0.1
4,795,197 - -1.2
4,795,266 + -0.5
4,795,267 - +0.5
4,795,267 - -1.1
4,795,267 - -1.1
4,795,400 + -0.5
4,795,469 + Pf1N1B4_4336 0.34 +1.1
4,795,469 + Pf1N1B4_4336 0.34 -1.0
4,795,470 - Pf1N1B4_4336 0.34 -1.1
4,795,470 - Pf1N1B4_4336 0.34 +1.1
4,795,580 + -0.5
4,795,580 + Pf1N1B4_4336 0.51 +0.0
4,795,759 - -1.5
4,795,809 - +0.3
4,796,007 + -1.2
4,796,140 + Pf1N1B4_4337 0.18 +2.1
4,796,141 - Pf1N1B4_4337 0.18 +0.9
4,796,189 + Pf1N1B4_4337 0.24 +0.3
4,796,189 + -0.5
4,796,603 - Pf1N1B4_4337 0.72 -0.5
4,796,709 + Pf1N1B4_4337 0.84 -0.5
4,796,710 - Pf1N1B4_4337 0.84 +0.5
4,796,710 - Pf1N1B4_4337 0.84 +0.8
4,796,819 + -1.1
4,796,819 + +1.1
4,796,819 + -1.5
4,796,819 + -0.5
4,796,820 - -1.1
4,796,820 - +1.1
4,796,864 + -0.5
4,796,864 + -0.4
4,796,864 + -0.5
4,796,864 + +2.3

Or see this region's nucleotide sequence