Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4133

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4131 and Pf1N1B4_4132 overlap by 4 nucleotidesPf1N1B4_4132 and Pf1N1B4_4133 are separated by 90 nucleotides Pf1N1B4_4131 - Mobile element protein, at 4,572,187 to 4,572,507 _4131 Pf1N1B4_4132 - Mobile element protein, at 4,572,504 to 4,572,839 _4132 Pf1N1B4_4133 - Mobile element protein, at 4,572,930 to 4,573,388 _4133 Position (kb) 4572 4573 4574Strain fitness (log2 ratio) -2 -1 0 1 2at 4571.986 kb on + strandat 4571.986 kb on + strandat 4571.986 kb on + strandat 4571.987 kb on - strandat 4572.056 kb on + strandat 4572.056 kb on + strandat 4572.057 kb on - strandat 4572.088 kb on + strandat 4572.385 kb on - strand, within Pf1N1B4_4131at 4572.621 kb on + strand, within Pf1N1B4_4132at 4572.621 kb on + strand, within Pf1N1B4_4132at 4572.621 kb on + strand, within Pf1N1B4_4132at 4572.732 kb on - strand, within Pf1N1B4_4132at 4572.784 kb on + strand, within Pf1N1B4_4132at 4572.922 kb on + strandat 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.074 kb on + strandat 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.074 kb on + strandat 4573.074 kb on + strandat 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.074 kb on + strand, within Pf1N1B4_4133at 4573.075 kb on - strandat 4573.075 kb on - strand, within Pf1N1B4_4133at 4573.288 kb on - strandat 4573.294 kb on - strand, within Pf1N1B4_4133at 4573.375 kb on + strandat 4573.376 kb on - strandat 4573.386 kb on + strandat 4573.386 kb on + strandat 4573.386 kb on + strandat 4573.386 kb on + strandat 4573.386 kb on + strandat 4573.386 kb on + strandat 4573.387 kb on - strandat 4573.387 kb on - strandat 4573.387 kb on - strandat 4573.387 kb on - strandat 4573.434 kb on + strandat 4573.435 kb on - strandat 4573.435 kb on - strandat 4573.435 kb on - strandat 4573.679 kb on + strandat 4573.795 kb on + strandat 4573.873 kb on - strandat 4573.873 kb on - strandat 4573.873 kb on - strandat 4573.966 kb on - strandat 4574.082 kb on + strandat 4574.083 kb on - strandat 4574.083 kb on - strandat 4574.083 kb on - strandat 4574.239 kb on - strandat 4574.357 kb on + strandat 4574.357 kb on + strandat 4574.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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4,571,986 + -0.4
4,571,986 + +0.2
4,571,986 + -2.0
4,571,987 - -1.2
4,572,056 + -0.7
4,572,056 + -1.6
4,572,057 - +0.2
4,572,088 + -0.4
4,572,385 - Pf1N1B4_4131 0.62 -0.4
4,572,621 + Pf1N1B4_4132 0.35 -0.2
4,572,621 + Pf1N1B4_4132 0.35 -0.4
4,572,621 + Pf1N1B4_4132 0.35 +0.6
4,572,732 - Pf1N1B4_4132 0.68 -0.1
4,572,784 + Pf1N1B4_4132 0.83 -1.4
4,572,922 + -0.4
4,573,074 + Pf1N1B4_4133 0.31 +0.4
4,573,074 + -0.4
4,573,074 + Pf1N1B4_4133 0.31 -0.4
4,573,074 + Pf1N1B4_4133 0.31 -0.0
4,573,074 + -0.4
4,573,074 + -0.4
4,573,074 + Pf1N1B4_4133 0.31 +0.2
4,573,074 + Pf1N1B4_4133 0.31 +0.2
4,573,074 + Pf1N1B4_4133 0.31 +0.8
4,573,075 - -0.4
4,573,075 - Pf1N1B4_4133 0.32 +0.6
4,573,288 - -0.4
4,573,294 - Pf1N1B4_4133 0.79 +0.6
4,573,375 + -0.4
4,573,376 - +0.9
4,573,386 + +0.6
4,573,386 + -1.8
4,573,386 + +1.2
4,573,386 + -2.4
4,573,386 + +0.9
4,573,386 + -0.2
4,573,387 - -0.0
4,573,387 - -1.4
4,573,387 - -1.0
4,573,387 - -1.2
4,573,434 + -1.3
4,573,435 - +0.4
4,573,435 - -1.4
4,573,435 - -2.4
4,573,679 + -0.4
4,573,795 + -0.3
4,573,873 - -0.4
4,573,873 - +0.6
4,573,873 - -1.4
4,573,966 - -0.0
4,574,082 + +0.1
4,574,083 - -0.4
4,574,083 - +2.6
4,574,083 - +1.2
4,574,239 - +0.9
4,574,357 + -0.1
4,574,357 + -1.8
4,574,358 - +0.6

Or see this region's nucleotide sequence