Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4131 and Pf1N1B4_4132 overlap by 4 nucleotides Pf1N1B4_4132 and Pf1N1B4_4133 are separated by 90 nucleotides
Pf1N1B4_4131 - Mobile element protein, at 4,572,187 to 4,572,507
_4131
Pf1N1B4_4132 - Mobile element protein, at 4,572,504 to 4,572,839
_4132
Pf1N1B4_4133 - Mobile element protein, at 4,572,930 to 4,573,388
_4133
Position (kb)
4572
4573
4574 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4571.986 kb on + strand at 4571.986 kb on + strand at 4571.986 kb on + strand at 4571.987 kb on - strand at 4572.056 kb on + strand at 4572.056 kb on + strand at 4572.057 kb on - strand at 4572.088 kb on + strand at 4572.385 kb on - strand, within Pf1N1B4_4131 at 4572.621 kb on + strand, within Pf1N1B4_4132 at 4572.621 kb on + strand, within Pf1N1B4_4132 at 4572.621 kb on + strand, within Pf1N1B4_4132 at 4572.732 kb on - strand, within Pf1N1B4_4132 at 4572.784 kb on + strand, within Pf1N1B4_4132 at 4572.922 kb on + strand at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.074 kb on + strand at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.074 kb on + strand at 4573.074 kb on + strand at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.075 kb on - strand at 4573.075 kb on - strand, within Pf1N1B4_4133 at 4573.288 kb on - strand at 4573.294 kb on - strand, within Pf1N1B4_4133 at 4573.375 kb on + strand at 4573.376 kb on - strand at 4573.386 kb on + strand at 4573.386 kb on + strand at 4573.386 kb on + strand at 4573.386 kb on + strand at 4573.386 kb on + strand at 4573.386 kb on + strand at 4573.387 kb on - strand at 4573.387 kb on - strand at 4573.387 kb on - strand at 4573.387 kb on - strand at 4573.434 kb on + strand at 4573.435 kb on - strand at 4573.435 kb on - strand at 4573.435 kb on - strand at 4573.679 kb on + strand at 4573.795 kb on + strand at 4573.873 kb on - strand at 4573.873 kb on - strand at 4573.873 kb on - strand at 4573.966 kb on - strand at 4574.082 kb on + strand at 4574.083 kb on - strand at 4574.083 kb on - strand at 4574.083 kb on - strand at 4574.239 kb on - strand at 4574.357 kb on + strand at 4574.357 kb on + strand at 4574.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 4,571,986 + -0.4 4,571,986 + +0.2 4,571,986 + -2.0 4,571,987 - -1.2 4,572,056 + -0.7 4,572,056 + -1.6 4,572,057 - +0.2 4,572,088 + -0.4 4,572,385 - Pf1N1B4_4131 0.62 -0.4 4,572,621 + Pf1N1B4_4132 0.35 -0.2 4,572,621 + Pf1N1B4_4132 0.35 -0.4 4,572,621 + Pf1N1B4_4132 0.35 +0.6 4,572,732 - Pf1N1B4_4132 0.68 -0.1 4,572,784 + Pf1N1B4_4132 0.83 -1.4 4,572,922 + -0.4 4,573,074 + Pf1N1B4_4133 0.31 +0.4 4,573,074 + -0.4 4,573,074 + Pf1N1B4_4133 0.31 -0.4 4,573,074 + Pf1N1B4_4133 0.31 -0.0 4,573,074 + -0.4 4,573,074 + -0.4 4,573,074 + Pf1N1B4_4133 0.31 +0.2 4,573,074 + Pf1N1B4_4133 0.31 +0.2 4,573,074 + Pf1N1B4_4133 0.31 +0.8 4,573,075 - -0.4 4,573,075 - Pf1N1B4_4133 0.32 +0.6 4,573,288 - -0.4 4,573,294 - Pf1N1B4_4133 0.79 +0.6 4,573,375 + -0.4 4,573,376 - +0.9 4,573,386 + +0.6 4,573,386 + -1.8 4,573,386 + +1.2 4,573,386 + -2.4 4,573,386 + +0.9 4,573,386 + -0.2 4,573,387 - -0.0 4,573,387 - -1.4 4,573,387 - -1.0 4,573,387 - -1.2 4,573,434 + -1.3 4,573,435 - +0.4 4,573,435 - -1.4 4,573,435 - -2.4 4,573,679 + -0.4 4,573,795 + -0.3 4,573,873 - -0.4 4,573,873 - +0.6 4,573,873 - -1.4 4,573,966 - -0.0 4,574,082 + +0.1 4,574,083 - -0.4 4,574,083 - +2.6 4,574,083 - +1.2 4,574,239 - +0.9 4,574,357 + -0.1 4,574,357 + -1.8 4,574,358 - +0.6
Or see this region's nucleotide sequence