Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4055

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4052 and Pf1N1B4_4053 are separated by 61 nucleotidesPf1N1B4_4053 and Pf1N1B4_4054 are separated by 341 nucleotidesPf1N1B4_4054 and Pf1N1B4_4055 are separated by 30 nucleotidesPf1N1B4_4055 and Pf1N1B4_4056 are separated by 259 nucleotidesPf1N1B4_4056 and Pf1N1B4_4057 are separated by 225 nucleotides Pf1N1B4_4052 - Isocitrate dehydrogenase [NADP] (EC 1.1.1.42), at 4,505,027 to 4,506,283 _4052 Pf1N1B4_4053 - Cold shock protein CspD, at 4,506,345 to 4,506,626 _4053 Pf1N1B4_4054 - ATP-dependent Clp protease adaptor protein ClpS, at 4,506,968 to 4,507,213 _4054 Pf1N1B4_4055 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 4,507,244 to 4,509,514 _4055 Pf1N1B4_4056 - Translation initiation factor 1, at 4,509,774 to 4,509,992 _4056 Pf1N1B4_4057 - Arginine-tRNA-protein transferase (EC 2.3.2.8), at 4,510,218 to 4,510,925 _4057 Position (kb) 4507 4508 4509 4510Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4506.281 kb on + strandat 4506.281 kb on + strandat 4506.281 kb on + strandat 4506.282 kb on - strandat 4506.487 kb on + strand, within Pf1N1B4_4053at 4506.488 kb on - strand, within Pf1N1B4_4053at 4506.512 kb on - strand, within Pf1N1B4_4053at 4506.555 kb on + strand, within Pf1N1B4_4053at 4506.555 kb on + strand, within Pf1N1B4_4053at 4506.556 kb on - strand, within Pf1N1B4_4053at 4506.556 kb on - strand, within Pf1N1B4_4053at 4506.556 kb on - strand, within Pf1N1B4_4053at 4506.663 kb on + strandat 4506.664 kb on - strandat 4506.686 kb on + strandat 4506.687 kb on - strandat 4506.687 kb on - strandat 4506.698 kb on + strandat 4506.739 kb on - strandat 4506.821 kb on + strandat 4506.821 kb on + strandat 4506.822 kb on - strandat 4506.822 kb on - strandat 4506.876 kb on + strandat 4506.903 kb on + strandat 4506.903 kb on + strandat 4506.943 kb on + strandat 4506.954 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.971 kb on + strandat 4506.972 kb on - strandat 4506.972 kb on - strandat 4506.998 kb on + strand, within Pf1N1B4_4054at 4506.998 kb on + strand, within Pf1N1B4_4054at 4506.998 kb on + strand, within Pf1N1B4_4054at 4506.998 kb on + strand, within Pf1N1B4_4054at 4506.998 kb on + strand, within Pf1N1B4_4054at 4506.999 kb on - strand, within Pf1N1B4_4054at 4506.999 kb on - strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.104 kb on + strand, within Pf1N1B4_4054at 4507.105 kb on - strand, within Pf1N1B4_4054at 4507.160 kb on + strand, within Pf1N1B4_4054at 4507.244 kb on - strandat 4507.503 kb on + strand, within Pf1N1B4_4055at 4507.504 kb on - strandat 4507.527 kb on + strand, within Pf1N1B4_4055at 4507.527 kb on + strand, within Pf1N1B4_4055at 4507.527 kb on + strand, within Pf1N1B4_4055at 4507.527 kb on + strand, within Pf1N1B4_4055at 4507.528 kb on - strand, within Pf1N1B4_4055at 4507.561 kb on + strand, within Pf1N1B4_4055at 4507.652 kb on + strand, within Pf1N1B4_4055at 4507.652 kb on + strand, within Pf1N1B4_4055at 4507.652 kb on + strand, within Pf1N1B4_4055at 4507.652 kb on + strand, within Pf1N1B4_4055at 4507.652 kb on + strand, within Pf1N1B4_4055at 4507.653 kb on - strandat 4507.653 kb on - strand, within Pf1N1B4_4055at 4507.653 kb on - strand, within Pf1N1B4_4055at 4507.714 kb on + strand, within Pf1N1B4_4055at 4507.714 kb on + strand, within Pf1N1B4_4055at 4507.769 kb on + strand, within Pf1N1B4_4055at 4507.821 kb on + strand, within Pf1N1B4_4055at 4507.991 kb on + strand, within Pf1N1B4_4055at 4508.372 kb on + strand, within Pf1N1B4_4055at 4508.515 kb on + strand, within Pf1N1B4_4055at 4508.606 kb on - strand, within Pf1N1B4_4055at 4508.634 kb on + strand, within Pf1N1B4_4055at 4508.634 kb on + strand, within Pf1N1B4_4055at 4508.635 kb on - strand, within Pf1N1B4_4055at 4508.825 kb on + strand, within Pf1N1B4_4055at 4508.825 kb on + strand, within Pf1N1B4_4055at 4508.825 kb on + strand, within Pf1N1B4_4055at 4508.825 kb on + strand, within Pf1N1B4_4055at 4508.825 kb on + strand, within Pf1N1B4_4055at 4508.826 kb on - strand, within Pf1N1B4_4055at 4508.826 kb on - strand, within Pf1N1B4_4055at 4508.873 kb on + strand, within Pf1N1B4_4055at 4508.873 kb on + strand, within Pf1N1B4_4055at 4509.116 kb on + strand, within Pf1N1B4_4055at 4509.338 kb on + strandat 4509.450 kb on + strandat 4509.450 kb on + strandat 4509.450 kb on + strandat 4509.450 kb on + strandat 4509.718 kb on + strandat 4509.719 kb on - strandat 4509.719 kb on - strandat 4510.112 kb on - strandat 4510.112 kb on - strandat 4510.112 kb on - strandat 4510.112 kb on - strandat 4510.200 kb on + strandat 4510.201 kb on - strandat 4510.201 kb on - strandat 4510.280 kb on - strandat 4510.280 kb on - strandat 4510.319 kb on - strand, within Pf1N1B4_4057at 4510.319 kb on - strand, within Pf1N1B4_4057at 4510.408 kb on + strand, within Pf1N1B4_4057at 4510.417 kb on + strand, within Pf1N1B4_4057at 4510.418 kb on - strand, within Pf1N1B4_4057at 4510.493 kb on - strand, within Pf1N1B4_4057at 4510.493 kb on - strand, within Pf1N1B4_4057at 4510.493 kb on - strand, within Pf1N1B4_4057

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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4,506,281 + -0.4
4,506,281 + -2.4
4,506,281 + +1.2
4,506,282 - +2.0
4,506,487 + Pf1N1B4_4053 0.50 +0.2
4,506,488 - Pf1N1B4_4053 0.51 -2.0
4,506,512 - Pf1N1B4_4053 0.59 -2.0
4,506,555 + Pf1N1B4_4053 0.74 -1.1
4,506,555 + Pf1N1B4_4053 0.74 +0.4
4,506,556 - Pf1N1B4_4053 0.75 +0.2
4,506,556 - Pf1N1B4_4053 0.75 -0.6
4,506,556 - Pf1N1B4_4053 0.75 -1.0
4,506,663 + -0.4
4,506,664 - +0.9
4,506,686 + +0.4
4,506,687 - -1.0
4,506,687 - -1.4
4,506,698 + +1.2
4,506,739 - -1.4
4,506,821 + -3.0
4,506,821 + +0.6
4,506,822 - +0.0
4,506,822 - -2.2
4,506,876 + -3.0
4,506,903 + -0.4
4,506,903 + -0.4
4,506,943 + -0.5
4,506,954 + +0.9
4,506,971 + +0.2
4,506,971 + -1.0
4,506,971 + +0.4
4,506,971 + -0.0
4,506,971 + -0.4
4,506,971 + +0.6
4,506,971 + +0.5
4,506,971 + +0.4
4,506,971 + -1.6
4,506,971 + -0.0
4,506,971 + +1.0
4,506,971 + -1.0
4,506,972 - -0.4
4,506,972 - -2.0
4,506,998 + Pf1N1B4_4054 0.12 +0.0
4,506,998 + Pf1N1B4_4054 0.12 -1.6
4,506,998 + Pf1N1B4_4054 0.12 -0.5
4,506,998 + Pf1N1B4_4054 0.12 +0.4
4,506,998 + Pf1N1B4_4054 0.12 +1.0
4,506,999 - Pf1N1B4_4054 0.13 +0.0
4,506,999 - Pf1N1B4_4054 0.13 -0.4
4,507,104 + Pf1N1B4_4054 0.55 -1.4
4,507,104 + Pf1N1B4_4054 0.55 +0.5
4,507,104 + Pf1N1B4_4054 0.55 -1.0
4,507,104 + Pf1N1B4_4054 0.55 -0.4
4,507,104 + Pf1N1B4_4054 0.55 -0.1
4,507,104 + Pf1N1B4_4054 0.55 -0.6
4,507,104 + Pf1N1B4_4054 0.55 -2.0
4,507,104 + Pf1N1B4_4054 0.55 -0.9
4,507,104 + Pf1N1B4_4054 0.55 -0.1
4,507,104 + Pf1N1B4_4054 0.55 +0.5
4,507,104 + Pf1N1B4_4054 0.55 +0.3
4,507,105 - Pf1N1B4_4054 0.56 +0.6
4,507,160 + Pf1N1B4_4054 0.78 +0.0
4,507,244 - -2.4
4,507,503 + Pf1N1B4_4055 0.11 -1.7
4,507,504 - -0.4
4,507,527 + Pf1N1B4_4055 0.12 -3.7
4,507,527 + Pf1N1B4_4055 0.12 +0.0
4,507,527 + Pf1N1B4_4055 0.12 -1.4
4,507,527 + Pf1N1B4_4055 0.12 -2.0
4,507,528 - Pf1N1B4_4055 0.13 -1.4
4,507,561 + Pf1N1B4_4055 0.14 -2.4
4,507,652 + Pf1N1B4_4055 0.18 -3.4
4,507,652 + Pf1N1B4_4055 0.18 -2.4
4,507,652 + Pf1N1B4_4055 0.18 -1.6
4,507,652 + Pf1N1B4_4055 0.18 -3.0
4,507,652 + Pf1N1B4_4055 0.18 -2.7
4,507,653 - -1.4
4,507,653 - Pf1N1B4_4055 0.18 -2.0
4,507,653 - Pf1N1B4_4055 0.18 -0.4
4,507,714 + Pf1N1B4_4055 0.21 -1.7
4,507,714 + Pf1N1B4_4055 0.21 -2.0
4,507,769 + Pf1N1B4_4055 0.23 -0.4
4,507,821 + Pf1N1B4_4055 0.25 -2.4
4,507,991 + Pf1N1B4_4055 0.33 -0.4
4,508,372 + Pf1N1B4_4055 0.50 -1.1
4,508,515 + Pf1N1B4_4055 0.56 -1.4
4,508,606 - Pf1N1B4_4055 0.60 -2.4
4,508,634 + Pf1N1B4_4055 0.61 -2.3
4,508,634 + Pf1N1B4_4055 0.61 -2.4
4,508,635 - Pf1N1B4_4055 0.61 -3.0
4,508,825 + Pf1N1B4_4055 0.70 -1.6
4,508,825 + Pf1N1B4_4055 0.70 -1.7
4,508,825 + Pf1N1B4_4055 0.70 +0.6
4,508,825 + Pf1N1B4_4055 0.70 -2.7
4,508,825 + Pf1N1B4_4055 0.70 -2.7
4,508,826 - Pf1N1B4_4055 0.70 -1.7
4,508,826 - Pf1N1B4_4055 0.70 -2.0
4,508,873 + Pf1N1B4_4055 0.72 -0.4
4,508,873 + Pf1N1B4_4055 0.72 -2.0
4,509,116 + Pf1N1B4_4055 0.82 -2.0
4,509,338 + -2.0
4,509,450 + +0.6
4,509,450 + -2.4
4,509,450 + -2.2
4,509,450 + -1.5
4,509,718 + -1.0
4,509,719 - -1.4
4,509,719 - +0.6
4,510,112 - +1.9
4,510,112 - +0.8
4,510,112 - -2.2
4,510,112 - -1.0
4,510,200 + -1.4
4,510,201 - -2.7
4,510,201 - +1.6
4,510,280 - +0.6
4,510,280 - -0.5
4,510,319 - Pf1N1B4_4057 0.14 -1.2
4,510,319 - Pf1N1B4_4057 0.14 +2.1
4,510,408 + Pf1N1B4_4057 0.27 -0.4
4,510,417 + Pf1N1B4_4057 0.28 -0.9
4,510,418 - Pf1N1B4_4057 0.28 +0.2
4,510,493 - Pf1N1B4_4057 0.39 -0.2
4,510,493 - Pf1N1B4_4057 0.39 -0.4
4,510,493 - Pf1N1B4_4057 0.39 -0.4

Or see this region's nucleotide sequence