Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3722

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3720 and Pf1N1B4_3721 are separated by 146 nucleotidesPf1N1B4_3721 and Pf1N1B4_3722 are separated by 274 nucleotides Pf1N1B4_3720 - Long-chain fatty acid transport protein, at 4,126,740 to 4,128,008 _3720 Pf1N1B4_3721 - FIG00956435: hypothetical protein, at 4,128,155 to 4,128,637 _3721 Pf1N1B4_3722 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 4,128,912 to 4,129,136 _3722 Position (kb) 4128 4129 4130Strain fitness (log2 ratio) -2 -1 0 1 2at 4127.998 kb on - strandat 4128.012 kb on + strandat 4128.013 kb on - strandat 4128.044 kb on - strandat 4128.435 kb on + strand, within Pf1N1B4_3721at 4128.435 kb on + strand, within Pf1N1B4_3721at 4128.436 kb on - strand, within Pf1N1B4_3721at 4128.583 kb on - strand, within Pf1N1B4_3721at 4128.606 kb on + strandat 4128.668 kb on + strandat 4128.753 kb on - strandat 4128.753 kb on - strandat 4128.936 kb on - strand, within Pf1N1B4_3722at 4128.974 kb on - strand, within Pf1N1B4_3722at 4128.999 kb on - strand, within Pf1N1B4_3722at 4128.999 kb on - strand, within Pf1N1B4_3722at 4129.136 kb on + strandat 4129.136 kb on + strandat 4129.136 kb on + strandat 4129.137 kb on - strandat 4129.137 kb on - strandat 4129.137 kb on - strandat 4129.137 kb on - strandat 4129.137 kb on - strandat 4129.137 kb on - strandat 4129.137 kb on - strandat 4129.137 kb on - strandat 4129.149 kb on + strandat 4129.150 kb on - strandat 4129.150 kb on - strandat 4129.182 kb on - strandat 4129.182 kb on - strandat 4129.288 kb on - strandat 4129.288 kb on - strandat 4129.288 kb on - strandat 4129.292 kb on - strandat 4129.292 kb on - strandat 4129.292 kb on - strandat 4129.292 kb on - strandat 4129.292 kb on - strandat 4129.292 kb on - strandat 4129.292 kb on - strandat 4129.292 kb on - strandat 4129.292 kb on - strandat 4129.292 kb on - strandat 4129.296 kb on - strandat 4129.296 kb on - strandat 4129.296 kb on - strandat 4129.296 kb on - strandat 4129.296 kb on - strandat 4129.296 kb on - strandat 4129.296 kb on - strandat 4129.296 kb on - strandat 4129.296 kb on - strandat 4129.296 kb on - strandat 4129.296 kb on - strandat 4129.381 kb on - strandat 4129.381 kb on - strandat 4129.381 kb on - strandat 4129.543 kb on + strandat 4129.544 kb on - strandat 4129.544 kb on - strandat 4130.031 kb on - strandat 4130.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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4,127,998 - -1.2
4,128,012 + +0.5
4,128,013 - -0.5
4,128,044 - +1.1
4,128,435 + Pf1N1B4_3721 0.58 +1.8
4,128,435 + Pf1N1B4_3721 0.58 +0.8
4,128,436 - Pf1N1B4_3721 0.58 -0.8
4,128,583 - Pf1N1B4_3721 0.89 +0.4
4,128,606 + -1.2
4,128,668 + +0.2
4,128,753 - -0.8
4,128,753 - -0.2
4,128,936 - Pf1N1B4_3722 0.11 +0.5
4,128,974 - Pf1N1B4_3722 0.28 +1.3
4,128,999 - Pf1N1B4_3722 0.39 +1.4
4,128,999 - Pf1N1B4_3722 0.39 -0.3
4,129,136 + -0.5
4,129,136 + -0.5
4,129,136 + -0.2
4,129,137 - -1.5
4,129,137 - +0.8
4,129,137 - -0.2
4,129,137 - +2.6
4,129,137 - +1.1
4,129,137 - -0.9
4,129,137 - -0.8
4,129,137 - -0.2
4,129,149 + +0.8
4,129,150 - -1.2
4,129,150 - +1.4
4,129,182 - -0.2
4,129,182 - +1.4
4,129,288 - -1.6
4,129,288 - +0.6
4,129,288 - -1.6
4,129,292 - -0.2
4,129,292 - -0.8
4,129,292 - -0.6
4,129,292 - -0.5
4,129,292 - -1.2
4,129,292 - -0.2
4,129,292 - +0.5
4,129,292 - -0.8
4,129,292 - +1.4
4,129,292 - +0.5
4,129,296 - -2.0
4,129,296 - +0.2
4,129,296 - +0.6
4,129,296 - -1.4
4,129,296 - -1.6
4,129,296 - -0.2
4,129,296 - +0.2
4,129,296 - -0.5
4,129,296 - -2.4
4,129,296 - +0.8
4,129,296 - -0.2
4,129,381 - +0.5
4,129,381 - -1.5
4,129,381 - -0.2
4,129,543 + -0.2
4,129,544 - +0.2
4,129,544 - -0.6
4,130,031 - -1.0
4,130,081 - -0.2

Or see this region's nucleotide sequence