Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1627

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1624 and Pf1N1B4_1625 are separated by 99 nucleotidesPf1N1B4_1625 and Pf1N1B4_1626 are separated by 0 nucleotidesPf1N1B4_1626 and Pf1N1B4_1627 overlap by 1 nucleotidesPf1N1B4_1627 and Pf1N1B4_1628 are separated by 229 nucleotides Pf1N1B4_1624 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 1,868,509 to 1,869,246 _1624 Pf1N1B4_1625 - FIG00956267: hypothetical protein, at 1,869,346 to 1,869,603 _1625 Pf1N1B4_1626 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 1,869,604 to 1,870,242 _1626 Pf1N1B4_1627 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 1,870,242 to 1,870,877 _1627 Pf1N1B4_1628 - MFS permease, at 1,871,107 to 1,872,771 _1628 Position (kb) 1870 1871Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1869.242 kb on - strandat 1869.242 kb on - strandat 1869.242 kb on - strandat 1869.242 kb on - strandat 1869.242 kb on - strandat 1869.242 kb on - strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.282 kb on + strandat 1869.283 kb on - strandat 1869.283 kb on - strandat 1869.304 kb on + strandat 1869.347 kb on + strandat 1869.348 kb on - strandat 1869.434 kb on + strand, within Pf1N1B4_1625at 1869.434 kb on + strand, within Pf1N1B4_1625at 1869.434 kb on + strand, within Pf1N1B4_1625at 1869.434 kb on + strand, within Pf1N1B4_1625at 1869.434 kb on + strand, within Pf1N1B4_1625at 1869.434 kb on + strand, within Pf1N1B4_1625at 1869.434 kb on + strand, within Pf1N1B4_1625at 1869.434 kb on + strand, within Pf1N1B4_1625at 1869.435 kb on - strand, within Pf1N1B4_1625at 1869.435 kb on - strand, within Pf1N1B4_1625at 1869.435 kb on - strand, within Pf1N1B4_1625at 1869.437 kb on + strand, within Pf1N1B4_1625at 1869.438 kb on - strand, within Pf1N1B4_1625at 1869.438 kb on - strand, within Pf1N1B4_1625at 1869.606 kb on - strandat 1869.776 kb on + strand, within Pf1N1B4_1626at 1869.776 kb on + strand, within Pf1N1B4_1626at 1869.776 kb on + strandat 1869.776 kb on + strand, within Pf1N1B4_1626at 1869.776 kb on + strand, within Pf1N1B4_1626at 1869.776 kb on + strand, within Pf1N1B4_1626at 1869.776 kb on + strand, within Pf1N1B4_1626at 1869.776 kb on + strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.777 kb on - strand, within Pf1N1B4_1626at 1869.779 kb on + strand, within Pf1N1B4_1626at 1869.779 kb on + strand, within Pf1N1B4_1626at 1869.779 kb on + strandat 1869.779 kb on + strand, within Pf1N1B4_1626at 1869.779 kb on + strand, within Pf1N1B4_1626at 1869.779 kb on + strand, within Pf1N1B4_1626at 1869.779 kb on + strand, within Pf1N1B4_1626at 1869.780 kb on - strand, within Pf1N1B4_1626at 1869.780 kb on - strand, within Pf1N1B4_1626at 1869.780 kb on - strand, within Pf1N1B4_1626at 1869.780 kb on - strand, within Pf1N1B4_1626at 1869.780 kb on - strand, within Pf1N1B4_1626at 1869.795 kb on - strand, within Pf1N1B4_1626at 1869.795 kb on - strand, within Pf1N1B4_1626at 1869.795 kb on - strand, within Pf1N1B4_1626at 1869.795 kb on - strand, within Pf1N1B4_1626at 1869.795 kb on - strand, within Pf1N1B4_1626at 1869.839 kb on - strand, within Pf1N1B4_1626at 1869.839 kb on - strand, within Pf1N1B4_1626at 1869.839 kb on - strand, within Pf1N1B4_1626at 1870.466 kb on + strand, within Pf1N1B4_1627at 1870.468 kb on + strand, within Pf1N1B4_1627at 1870.468 kb on + strand, within Pf1N1B4_1627at 1870.469 kb on - strand, within Pf1N1B4_1627at 1870.469 kb on - strand, within Pf1N1B4_1627at 1870.546 kb on + strand, within Pf1N1B4_1627at 1870.546 kb on + strand, within Pf1N1B4_1627at 1870.546 kb on + strand, within Pf1N1B4_1627at 1870.547 kb on - strand, within Pf1N1B4_1627at 1870.547 kb on - strand, within Pf1N1B4_1627at 1870.547 kb on - strand, within Pf1N1B4_1627at 1870.547 kb on - strand, within Pf1N1B4_1627at 1870.731 kb on + strand, within Pf1N1B4_1627at 1870.731 kb on + strand, within Pf1N1B4_1627at 1870.823 kb on + strandat 1870.823 kb on + strandat 1870.823 kb on + strandat 1870.824 kb on - strandat 1870.824 kb on - strandat 1870.824 kb on - strandat 1870.824 kb on - strandat 1870.824 kb on - strandat 1870.880 kb on + strandat 1870.880 kb on + strandat 1870.880 kb on + strandat 1870.880 kb on + strandat 1870.880 kb on + strandat 1870.880 kb on + strandat 1870.880 kb on + strandat 1870.880 kb on + strandat 1870.881 kb on - strandat 1870.881 kb on - strandat 1870.881 kb on - strandat 1870.881 kb on - strandat 1870.895 kb on + strandat 1870.917 kb on + strandat 1870.917 kb on + strandat 1870.953 kb on - strandat 1870.953 kb on - strandat 1870.964 kb on + strandat 1870.964 kb on + strandat 1870.964 kb on + strandat 1870.964 kb on + strandat 1870.964 kb on + strandat 1870.964 kb on + strandat 1870.964 kb on + strandat 1870.965 kb on - strandat 1870.965 kb on - strandat 1870.965 kb on - strandat 1870.965 kb on - strandat 1870.965 kb on - strandat 1871.109 kb on - strandat 1871.303 kb on + strand, within Pf1N1B4_1628at 1871.303 kb on + strand, within Pf1N1B4_1628at 1871.304 kb on - strand, within Pf1N1B4_1628at 1871.304 kb on - strand, within Pf1N1B4_1628at 1871.304 kb on - strand, within Pf1N1B4_1628at 1871.304 kb on - strand, within Pf1N1B4_1628at 1871.372 kb on + strand, within Pf1N1B4_1628at 1871.372 kb on + strand, within Pf1N1B4_1628at 1871.372 kb on + strand, within Pf1N1B4_1628at 1871.372 kb on + strand, within Pf1N1B4_1628at 1871.373 kb on - strand, within Pf1N1B4_1628at 1871.373 kb on - strand, within Pf1N1B4_1628at 1871.373 kb on - strand, within Pf1N1B4_1628at 1871.373 kb on - strand, within Pf1N1B4_1628at 1871.373 kb on - strand, within Pf1N1B4_1628at 1871.373 kb on - strand, within Pf1N1B4_1628at 1871.373 kb on - strand, within Pf1N1B4_1628at 1871.373 kb on - strand, within Pf1N1B4_1628at 1871.373 kb on - strand, within Pf1N1B4_1628at 1871.388 kb on - strand, within Pf1N1B4_1628at 1871.388 kb on - strand, within Pf1N1B4_1628at 1871.388 kb on - strand, within Pf1N1B4_1628at 1871.423 kb on + strand, within Pf1N1B4_1628at 1871.423 kb on + strand, within Pf1N1B4_1628at 1871.435 kb on + strand, within Pf1N1B4_1628at 1871.435 kb on + strand, within Pf1N1B4_1628at 1871.435 kb on + strand, within Pf1N1B4_1628at 1871.435 kb on + strand, within Pf1N1B4_1628at 1871.435 kb on + strand, within Pf1N1B4_1628at 1871.436 kb on - strand, within Pf1N1B4_1628at 1871.436 kb on - strand, within Pf1N1B4_1628at 1871.436 kb on - strand, within Pf1N1B4_1628at 1871.436 kb on - strand, within Pf1N1B4_1628at 1871.436 kb on - strand, within Pf1N1B4_1628at 1871.567 kb on + strand, within Pf1N1B4_1628at 1871.568 kb on - strand, within Pf1N1B4_1628at 1871.568 kb on - strand, within Pf1N1B4_1628at 1871.646 kb on - strand, within Pf1N1B4_1628at 1871.646 kb on - strand, within Pf1N1B4_1628at 1871.671 kb on + strand, within Pf1N1B4_1628at 1871.671 kb on + strand, within Pf1N1B4_1628at 1871.672 kb on - strand, within Pf1N1B4_1628at 1871.672 kb on - strand, within Pf1N1B4_1628at 1871.672 kb on - strand, within Pf1N1B4_1628at 1871.678 kb on + strand, within Pf1N1B4_1628at 1871.678 kb on + strand, within Pf1N1B4_1628at 1871.678 kb on + strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.679 kb on - strand, within Pf1N1B4_1628at 1871.699 kb on + strand, within Pf1N1B4_1628

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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1,869,242 - -1.1
1,869,242 - -2.1
1,869,242 - -2.6
1,869,242 - -1.9
1,869,242 - -2.9
1,869,242 - -1.6
1,869,282 + -1.1
1,869,282 + -3.4
1,869,282 + -3.6
1,869,282 + -1.6
1,869,282 + -2.6
1,869,282 + -1.6
1,869,282 + -3.0
1,869,282 + -2.4
1,869,282 + -2.4
1,869,282 + -2.6
1,869,282 + -1.6
1,869,282 + -2.0
1,869,282 + -1.6
1,869,283 - +1.0
1,869,283 - -0.6
1,869,304 + -1.1
1,869,347 + -2.6
1,869,348 - +0.8
1,869,434 + Pf1N1B4_1625 0.34 -2.6
1,869,434 + Pf1N1B4_1625 0.34 -1.1
1,869,434 + Pf1N1B4_1625 0.34 -3.0
1,869,434 + Pf1N1B4_1625 0.34 -4.1
1,869,434 + Pf1N1B4_1625 0.34 -5.0
1,869,434 + Pf1N1B4_1625 0.34 -1.1
1,869,434 + Pf1N1B4_1625 0.34 -1.9
1,869,434 + Pf1N1B4_1625 0.34 -3.1
1,869,435 - Pf1N1B4_1625 0.34 +1.4
1,869,435 - Pf1N1B4_1625 0.34 +2.0
1,869,435 - Pf1N1B4_1625 0.34 -2.1
1,869,437 + Pf1N1B4_1625 0.35 -1.1
1,869,438 - Pf1N1B4_1625 0.36 -2.1
1,869,438 - Pf1N1B4_1625 0.36 +0.4
1,869,606 - +0.1
1,869,776 + Pf1N1B4_1626 0.27 +0.4
1,869,776 + Pf1N1B4_1626 0.27 -2.4
1,869,776 + -0.6
1,869,776 + Pf1N1B4_1626 0.27 -0.4
1,869,776 + Pf1N1B4_1626 0.27 -3.0
1,869,776 + Pf1N1B4_1626 0.27 -0.6
1,869,776 + Pf1N1B4_1626 0.27 -2.6
1,869,776 + Pf1N1B4_1626 0.27 -2.6
1,869,777 - Pf1N1B4_1626 0.27 -1.1
1,869,777 - Pf1N1B4_1626 0.27 -2.1
1,869,777 - Pf1N1B4_1626 0.27 -3.1
1,869,777 - Pf1N1B4_1626 0.27 -0.6
1,869,777 - Pf1N1B4_1626 0.27 +2.0
1,869,777 - Pf1N1B4_1626 0.27 -2.4
1,869,777 - Pf1N1B4_1626 0.27 -3.1
1,869,777 - Pf1N1B4_1626 0.27 -2.1
1,869,777 - Pf1N1B4_1626 0.27 -2.4
1,869,777 - Pf1N1B4_1626 0.27 -2.1
1,869,777 - Pf1N1B4_1626 0.27 -2.9
1,869,777 - Pf1N1B4_1626 0.27 -0.6
1,869,777 - Pf1N1B4_1626 0.27 -2.4
1,869,779 + Pf1N1B4_1626 0.27 -2.6
1,869,779 + Pf1N1B4_1626 0.27 -1.6
1,869,779 + -0.6
1,869,779 + Pf1N1B4_1626 0.27 -1.1
1,869,779 + Pf1N1B4_1626 0.27 -1.6
1,869,779 + Pf1N1B4_1626 0.27 -2.7
1,869,779 + Pf1N1B4_1626 0.27 -1.1
1,869,780 - Pf1N1B4_1626 0.28 -2.6
1,869,780 - Pf1N1B4_1626 0.28 -1.6
1,869,780 - Pf1N1B4_1626 0.28 -2.4
1,869,780 - Pf1N1B4_1626 0.28 -0.6
1,869,780 - Pf1N1B4_1626 0.28 -2.4
1,869,795 - Pf1N1B4_1626 0.30 -1.9
1,869,795 - Pf1N1B4_1626 0.30 -3.6
1,869,795 - Pf1N1B4_1626 0.30 -2.7
1,869,795 - Pf1N1B4_1626 0.30 -1.9
1,869,795 - Pf1N1B4_1626 0.30 -1.6
1,869,839 - Pf1N1B4_1626 0.37 +0.4
1,869,839 - Pf1N1B4_1626 0.37 -2.6
1,869,839 - Pf1N1B4_1626 0.37 -1.6
1,870,466 + Pf1N1B4_1627 0.35 -1.1
1,870,468 + Pf1N1B4_1627 0.36 -1.7
1,870,468 + Pf1N1B4_1627 0.36 -1.6
1,870,469 - Pf1N1B4_1627 0.36 -0.6
1,870,469 - Pf1N1B4_1627 0.36 -1.9
1,870,546 + Pf1N1B4_1627 0.48 -2.6
1,870,546 + Pf1N1B4_1627 0.48 -2.1
1,870,546 + Pf1N1B4_1627 0.48 -1.6
1,870,547 - Pf1N1B4_1627 0.48 +0.4
1,870,547 - Pf1N1B4_1627 0.48 -2.1
1,870,547 - Pf1N1B4_1627 0.48 -0.6
1,870,547 - Pf1N1B4_1627 0.48 -2.4
1,870,731 + Pf1N1B4_1627 0.77 -3.3
1,870,731 + Pf1N1B4_1627 0.77 -1.1
1,870,823 + -2.6
1,870,823 + -3.1
1,870,823 + -2.4
1,870,824 - -1.9
1,870,824 - -1.1
1,870,824 - +1.4
1,870,824 - -2.6
1,870,824 - -1.9
1,870,880 + -1.1
1,870,880 + -1.6
1,870,880 + +0.4
1,870,880 + -1.1
1,870,880 + -1.6
1,870,880 + -2.4
1,870,880 + -1.7
1,870,880 + -1.1
1,870,881 - +1.4
1,870,881 - +1.4
1,870,881 - +1.9
1,870,881 - +0.4
1,870,895 + -1.6
1,870,917 + -0.7
1,870,917 + -0.7
1,870,953 - +2.0
1,870,953 - -2.1
1,870,964 + -0.6
1,870,964 + +0.4
1,870,964 + -0.8
1,870,964 + -0.7
1,870,964 + +0.9
1,870,964 + -0.4
1,870,964 + +1.4
1,870,965 - -1.1
1,870,965 - +0.4
1,870,965 - -0.1
1,870,965 - -1.9
1,870,965 - +2.0
1,871,109 - -0.6
1,871,303 + Pf1N1B4_1628 0.12 -0.1
1,871,303 + Pf1N1B4_1628 0.12 +0.4
1,871,304 - Pf1N1B4_1628 0.12 -1.9
1,871,304 - Pf1N1B4_1628 0.12 -0.6
1,871,304 - Pf1N1B4_1628 0.12 -0.6
1,871,304 - Pf1N1B4_1628 0.12 +0.0
1,871,372 + Pf1N1B4_1628 0.16 -0.6
1,871,372 + Pf1N1B4_1628 0.16 -1.9
1,871,372 + Pf1N1B4_1628 0.16 +0.4
1,871,372 + Pf1N1B4_1628 0.16 +0.9
1,871,373 - Pf1N1B4_1628 0.16 -0.6
1,871,373 - Pf1N1B4_1628 0.16 -0.1
1,871,373 - Pf1N1B4_1628 0.16 -1.4
1,871,373 - Pf1N1B4_1628 0.16 +1.0
1,871,373 - Pf1N1B4_1628 0.16 -0.6
1,871,373 - Pf1N1B4_1628 0.16 -1.1
1,871,373 - Pf1N1B4_1628 0.16 -1.1
1,871,373 - Pf1N1B4_1628 0.16 +1.4
1,871,373 - Pf1N1B4_1628 0.16 -0.6
1,871,388 - Pf1N1B4_1628 0.17 +1.2
1,871,388 - Pf1N1B4_1628 0.17 -0.2
1,871,388 - Pf1N1B4_1628 0.17 +0.4
1,871,423 + Pf1N1B4_1628 0.19 +0.4
1,871,423 + Pf1N1B4_1628 0.19 +0.3
1,871,435 + Pf1N1B4_1628 0.20 -0.3
1,871,435 + Pf1N1B4_1628 0.20 -0.6
1,871,435 + Pf1N1B4_1628 0.20 -0.6
1,871,435 + Pf1N1B4_1628 0.20 -1.1
1,871,435 + Pf1N1B4_1628 0.20 +1.4
1,871,436 - Pf1N1B4_1628 0.20 -2.7
1,871,436 - Pf1N1B4_1628 0.20 -0.4
1,871,436 - Pf1N1B4_1628 0.20 +0.4
1,871,436 - Pf1N1B4_1628 0.20 -0.1
1,871,436 - Pf1N1B4_1628 0.20 -0.1
1,871,567 + Pf1N1B4_1628 0.28 -1.9
1,871,568 - Pf1N1B4_1628 0.28 -0.9
1,871,568 - Pf1N1B4_1628 0.28 +0.4
1,871,646 - Pf1N1B4_1628 0.32 -0.3
1,871,646 - Pf1N1B4_1628 0.32 +0.4
1,871,671 + Pf1N1B4_1628 0.34 +0.4
1,871,671 + Pf1N1B4_1628 0.34 -0.4
1,871,672 - Pf1N1B4_1628 0.34 -0.6
1,871,672 - Pf1N1B4_1628 0.34 -1.7
1,871,672 - Pf1N1B4_1628 0.34 -0.6
1,871,678 + Pf1N1B4_1628 0.34 -1.1
1,871,678 + Pf1N1B4_1628 0.34 +1.8
1,871,678 + Pf1N1B4_1628 0.34 -0.7
1,871,679 - Pf1N1B4_1628 0.34 -0.1
1,871,679 - Pf1N1B4_1628 0.34 +0.4
1,871,679 - Pf1N1B4_1628 0.34 -0.6
1,871,679 - Pf1N1B4_1628 0.34 +1.8
1,871,679 - Pf1N1B4_1628 0.34 +0.4
1,871,679 - Pf1N1B4_1628 0.34 -0.1
1,871,679 - Pf1N1B4_1628 0.34 -2.9
1,871,679 - Pf1N1B4_1628 0.34 -0.3
1,871,679 - Pf1N1B4_1628 0.34 -1.1
1,871,679 - Pf1N1B4_1628 0.34 -1.1
1,871,679 - Pf1N1B4_1628 0.34 -0.3
1,871,679 - Pf1N1B4_1628 0.34 -1.6
1,871,699 + Pf1N1B4_1628 0.36 -1.9

Or see this region's nucleotide sequence