Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1472

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1471 and Pf1N1B4_1472 overlap by 1 nucleotidesPf1N1B4_1472 and Pf1N1B4_1473 are separated by 1 nucleotides Pf1N1B4_1471 - UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-), at 1,685,586 to 1,686,707 _1471 Pf1N1B4_1472 - Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-), at 1,686,707 to 1,687,768 _1472 Pf1N1B4_1473 - ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-), at 1,687,770 to 1,688,804 _1473 Position (kb) 1686 1687 1688Strain fitness (log2 ratio) -2 -1 0 1at 1687.301 kb on - strand, within Pf1N1B4_1472at 1687.772 kb on - strandat 1687.772 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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1,687,301 - Pf1N1B4_1472 0.56 +0.5
1,687,772 - -1.9
1,687,772 - -0.1

Or see this region's nucleotide sequence