Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1369 and Pf1N1B4_1370 are separated by 156 nucleotides Pf1N1B4_1370 and Pf1N1B4_1371 are separated by 298 nucleotides Pf1N1B4_1371 and Pf1N1B4_1372 overlap by 4 nucleotides
Pf1N1B4_1369 - FIG00963947: hypothetical protein, at 1,568,601 to 1,569,071
_1369
Pf1N1B4_1370 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 1,569,228 to 1,569,860
_1370
Pf1N1B4_1371 - Urease accessory protein UreE, at 1,570,159 to 1,570,659
_1371
Pf1N1B4_1372 - Urease accessory protein UreF, at 1,570,656 to 1,571,330
_1372
Position (kb)
1569
1570 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1568.232 kb on - strand at 1568.232 kb on - strand at 1568.299 kb on + strand at 1568.299 kb on + strand at 1568.300 kb on - strand at 1568.300 kb on - strand at 1568.300 kb on - strand at 1568.341 kb on + strand at 1568.341 kb on + strand at 1568.341 kb on + strand at 1568.341 kb on + strand at 1568.341 kb on + strand at 1568.342 kb on - strand at 1568.342 kb on - strand at 1568.342 kb on - strand at 1568.342 kb on - strand at 1568.342 kb on - strand at 1568.353 kb on - strand at 1568.353 kb on - strand at 1568.472 kb on + strand at 1568.508 kb on - strand at 1568.511 kb on - strand at 1568.511 kb on - strand at 1568.523 kb on - strand at 1568.532 kb on + strand at 1568.533 kb on - strand at 1568.551 kb on + strand at 1568.614 kb on + strand at 1568.615 kb on - strand at 1568.615 kb on - strand at 1568.615 kb on - strand at 1568.873 kb on + strand, within Pf1N1B4_1369 at 1568.873 kb on + strand, within Pf1N1B4_1369 at 1568.874 kb on - strand at 1569.069 kb on + strand at 1569.069 kb on + strand at 1569.069 kb on + strand at 1569.069 kb on + strand at 1569.069 kb on + strand at 1569.069 kb on + strand at 1569.069 kb on + strand at 1569.070 kb on - strand at 1569.070 kb on - strand at 1569.070 kb on - strand at 1569.070 kb on - strand at 1569.070 kb on - strand at 1569.124 kb on + strand at 1569.124 kb on + strand at 1569.125 kb on - strand at 1569.125 kb on - strand at 1569.125 kb on - strand at 1569.127 kb on - strand at 1569.189 kb on + strand at 1569.189 kb on + strand at 1569.372 kb on + strand, within Pf1N1B4_1370 at 1569.568 kb on - strand, within Pf1N1B4_1370 at 1569.859 kb on - strand at 1570.092 kb on - strand at 1570.313 kb on - strand, within Pf1N1B4_1371 at 1570.328 kb on + strand, within Pf1N1B4_1371 at 1570.328 kb on + strand, within Pf1N1B4_1371 at 1570.328 kb on + strand, within Pf1N1B4_1371 at 1570.328 kb on + strand, within Pf1N1B4_1371 at 1570.329 kb on - strand, within Pf1N1B4_1371 at 1570.329 kb on - strand, within Pf1N1B4_1371 at 1570.329 kb on - strand, within Pf1N1B4_1371 at 1570.349 kb on + strand, within Pf1N1B4_1371 at 1570.492 kb on + strand, within Pf1N1B4_1371 at 1570.492 kb on + strand, within Pf1N1B4_1371 at 1570.492 kb on + strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.493 kb on - strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.496 kb on + strand, within Pf1N1B4_1371 at 1570.497 kb on - strand, within Pf1N1B4_1371 at 1570.497 kb on - strand, within Pf1N1B4_1371 at 1570.497 kb on - strand, within Pf1N1B4_1371 at 1570.497 kb on - strand, within Pf1N1B4_1371 at 1570.573 kb on + strand, within Pf1N1B4_1371 at 1570.656 kb on - strand at 1570.714 kb on - strand at 1570.719 kb on + strand at 1570.719 kb on + strand at 1570.719 kb on + strand at 1570.719 kb on + strand at 1570.720 kb on - strand at 1570.720 kb on - strand at 1570.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 1,568,232 - -0.7 1,568,232 - -1.5 1,568,299 + -1.3 1,568,299 + -0.2 1,568,300 - +0.5 1,568,300 - -0.7 1,568,300 - -1.3 1,568,341 + +0.9 1,568,341 + +0.0 1,568,341 + -0.1 1,568,341 + +0.3 1,568,341 + +0.3 1,568,342 - +1.9 1,568,342 - -1.0 1,568,342 - -1.6 1,568,342 - +0.3 1,568,342 - +0.3 1,568,353 - -0.7 1,568,353 - +1.9 1,568,472 + -0.7 1,568,508 - -0.1 1,568,511 - +0.7 1,568,511 - +0.3 1,568,523 - -0.4 1,568,532 + -0.1 1,568,533 - +3.1 1,568,551 + -0.7 1,568,614 + +0.7 1,568,615 - -0.4 1,568,615 - -0.2 1,568,615 - -0.9 1,568,873 + Pf1N1B4_1369 0.58 +0.0 1,568,873 + Pf1N1B4_1369 0.58 -0.1 1,568,874 - +1.9 1,569,069 + -1.0 1,569,069 + -0.2 1,569,069 + +0.3 1,569,069 + +0.3 1,569,069 + -0.1 1,569,069 + +1.3 1,569,069 + -1.1 1,569,070 - +0.2 1,569,070 - +0.1 1,569,070 - +0.1 1,569,070 - +0.3 1,569,070 - +0.3 1,569,124 + +1.9 1,569,124 + -2.0 1,569,125 - +1.3 1,569,125 - -2.5 1,569,125 - +0.3 1,569,127 - -0.7 1,569,189 + -1.4 1,569,189 + +0.3 1,569,372 + Pf1N1B4_1370 0.23 +0.0 1,569,568 - Pf1N1B4_1370 0.54 +1.2 1,569,859 - +0.7 1,570,092 - -1.0 1,570,313 - Pf1N1B4_1371 0.31 -0.7 1,570,328 + Pf1N1B4_1371 0.34 -1.3 1,570,328 + Pf1N1B4_1371 0.34 +0.3 1,570,328 + Pf1N1B4_1371 0.34 -0.7 1,570,328 + Pf1N1B4_1371 0.34 +0.9 1,570,329 - Pf1N1B4_1371 0.34 +0.3 1,570,329 - Pf1N1B4_1371 0.34 +0.1 1,570,329 - Pf1N1B4_1371 0.34 -0.6 1,570,349 + Pf1N1B4_1371 0.38 -0.8 1,570,492 + Pf1N1B4_1371 0.66 +0.7 1,570,492 + Pf1N1B4_1371 0.66 -0.5 1,570,492 + Pf1N1B4_1371 0.66 -1.0 1,570,493 - Pf1N1B4_1371 0.67 +1.6 1,570,493 - Pf1N1B4_1371 0.67 +0.3 1,570,493 - Pf1N1B4_1371 0.67 -0.2 1,570,493 - Pf1N1B4_1371 0.67 +0.3 1,570,493 - Pf1N1B4_1371 0.67 -0.0 1,570,493 - Pf1N1B4_1371 0.67 -0.3 1,570,493 - Pf1N1B4_1371 0.67 -0.4 1,570,493 - Pf1N1B4_1371 0.67 -0.3 1,570,493 - Pf1N1B4_1371 0.67 -0.9 1,570,496 + Pf1N1B4_1371 0.67 -2.3 1,570,496 + Pf1N1B4_1371 0.67 +0.3 1,570,496 + Pf1N1B4_1371 0.67 +0.3 1,570,496 + Pf1N1B4_1371 0.67 -1.7 1,570,496 + Pf1N1B4_1371 0.67 -0.1 1,570,496 + Pf1N1B4_1371 0.67 +1.7 1,570,496 + Pf1N1B4_1371 0.67 -0.7 1,570,496 + Pf1N1B4_1371 0.67 +0.3 1,570,497 - Pf1N1B4_1371 0.67 -0.7 1,570,497 - Pf1N1B4_1371 0.67 -0.1 1,570,497 - Pf1N1B4_1371 0.67 -1.0 1,570,497 - Pf1N1B4_1371 0.67 -1.1 1,570,573 + Pf1N1B4_1371 0.83 +0.3 1,570,656 - +0.6 1,570,714 - -1.0 1,570,719 + +2.3 1,570,719 + -0.3 1,570,719 + -0.0 1,570,719 + -0.5 1,570,720 - -0.2 1,570,720 - +0.3 1,570,720 - +2.9
Or see this region's nucleotide sequence