Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1370

Experiment: L-Isoleucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1369 and Pf1N1B4_1370 are separated by 156 nucleotidesPf1N1B4_1370 and Pf1N1B4_1371 are separated by 298 nucleotidesPf1N1B4_1371 and Pf1N1B4_1372 overlap by 4 nucleotides Pf1N1B4_1369 - FIG00963947: hypothetical protein, at 1,568,601 to 1,569,071 _1369 Pf1N1B4_1370 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 1,569,228 to 1,569,860 _1370 Pf1N1B4_1371 - Urease accessory protein UreE, at 1,570,159 to 1,570,659 _1371 Pf1N1B4_1372 - Urease accessory protein UreF, at 1,570,656 to 1,571,330 _1372 Position (kb) 1569 1570Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1568.232 kb on - strandat 1568.232 kb on - strandat 1568.299 kb on + strandat 1568.299 kb on + strandat 1568.300 kb on - strandat 1568.300 kb on - strandat 1568.300 kb on - strandat 1568.341 kb on + strandat 1568.341 kb on + strandat 1568.341 kb on + strandat 1568.341 kb on + strandat 1568.341 kb on + strandat 1568.342 kb on - strandat 1568.342 kb on - strandat 1568.342 kb on - strandat 1568.342 kb on - strandat 1568.342 kb on - strandat 1568.353 kb on - strandat 1568.353 kb on - strandat 1568.472 kb on + strandat 1568.508 kb on - strandat 1568.511 kb on - strandat 1568.511 kb on - strandat 1568.523 kb on - strandat 1568.532 kb on + strandat 1568.533 kb on - strandat 1568.551 kb on + strandat 1568.614 kb on + strandat 1568.615 kb on - strandat 1568.615 kb on - strandat 1568.615 kb on - strandat 1568.873 kb on + strand, within Pf1N1B4_1369at 1568.873 kb on + strand, within Pf1N1B4_1369at 1568.874 kb on - strandat 1569.069 kb on + strandat 1569.069 kb on + strandat 1569.069 kb on + strandat 1569.069 kb on + strandat 1569.069 kb on + strandat 1569.069 kb on + strandat 1569.069 kb on + strandat 1569.070 kb on - strandat 1569.070 kb on - strandat 1569.070 kb on - strandat 1569.070 kb on - strandat 1569.070 kb on - strandat 1569.124 kb on + strandat 1569.124 kb on + strandat 1569.125 kb on - strandat 1569.125 kb on - strandat 1569.125 kb on - strandat 1569.127 kb on - strandat 1569.189 kb on + strandat 1569.189 kb on + strandat 1569.372 kb on + strand, within Pf1N1B4_1370at 1569.568 kb on - strand, within Pf1N1B4_1370at 1569.859 kb on - strandat 1570.092 kb on - strandat 1570.313 kb on - strand, within Pf1N1B4_1371at 1570.328 kb on + strand, within Pf1N1B4_1371at 1570.328 kb on + strand, within Pf1N1B4_1371at 1570.328 kb on + strand, within Pf1N1B4_1371at 1570.328 kb on + strand, within Pf1N1B4_1371at 1570.329 kb on - strand, within Pf1N1B4_1371at 1570.329 kb on - strand, within Pf1N1B4_1371at 1570.329 kb on - strand, within Pf1N1B4_1371at 1570.349 kb on + strand, within Pf1N1B4_1371at 1570.492 kb on + strand, within Pf1N1B4_1371at 1570.492 kb on + strand, within Pf1N1B4_1371at 1570.492 kb on + strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.493 kb on - strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.496 kb on + strand, within Pf1N1B4_1371at 1570.497 kb on - strand, within Pf1N1B4_1371at 1570.497 kb on - strand, within Pf1N1B4_1371at 1570.497 kb on - strand, within Pf1N1B4_1371at 1570.497 kb on - strand, within Pf1N1B4_1371at 1570.573 kb on + strand, within Pf1N1B4_1371at 1570.656 kb on - strandat 1570.714 kb on - strandat 1570.719 kb on + strandat 1570.719 kb on + strandat 1570.719 kb on + strandat 1570.719 kb on + strandat 1570.720 kb on - strandat 1570.720 kb on - strandat 1570.720 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
remove
1,568,232 - -0.7
1,568,232 - -1.5
1,568,299 + -1.3
1,568,299 + -0.2
1,568,300 - +0.5
1,568,300 - -0.7
1,568,300 - -1.3
1,568,341 + +0.9
1,568,341 + +0.0
1,568,341 + -0.1
1,568,341 + +0.3
1,568,341 + +0.3
1,568,342 - +1.9
1,568,342 - -1.0
1,568,342 - -1.6
1,568,342 - +0.3
1,568,342 - +0.3
1,568,353 - -0.7
1,568,353 - +1.9
1,568,472 + -0.7
1,568,508 - -0.1
1,568,511 - +0.7
1,568,511 - +0.3
1,568,523 - -0.4
1,568,532 + -0.1
1,568,533 - +3.1
1,568,551 + -0.7
1,568,614 + +0.7
1,568,615 - -0.4
1,568,615 - -0.2
1,568,615 - -0.9
1,568,873 + Pf1N1B4_1369 0.58 +0.0
1,568,873 + Pf1N1B4_1369 0.58 -0.1
1,568,874 - +1.9
1,569,069 + -1.0
1,569,069 + -0.2
1,569,069 + +0.3
1,569,069 + +0.3
1,569,069 + -0.1
1,569,069 + +1.3
1,569,069 + -1.1
1,569,070 - +0.2
1,569,070 - +0.1
1,569,070 - +0.1
1,569,070 - +0.3
1,569,070 - +0.3
1,569,124 + +1.9
1,569,124 + -2.0
1,569,125 - +1.3
1,569,125 - -2.5
1,569,125 - +0.3
1,569,127 - -0.7
1,569,189 + -1.4
1,569,189 + +0.3
1,569,372 + Pf1N1B4_1370 0.23 +0.0
1,569,568 - Pf1N1B4_1370 0.54 +1.2
1,569,859 - +0.7
1,570,092 - -1.0
1,570,313 - Pf1N1B4_1371 0.31 -0.7
1,570,328 + Pf1N1B4_1371 0.34 -1.3
1,570,328 + Pf1N1B4_1371 0.34 +0.3
1,570,328 + Pf1N1B4_1371 0.34 -0.7
1,570,328 + Pf1N1B4_1371 0.34 +0.9
1,570,329 - Pf1N1B4_1371 0.34 +0.3
1,570,329 - Pf1N1B4_1371 0.34 +0.1
1,570,329 - Pf1N1B4_1371 0.34 -0.6
1,570,349 + Pf1N1B4_1371 0.38 -0.8
1,570,492 + Pf1N1B4_1371 0.66 +0.7
1,570,492 + Pf1N1B4_1371 0.66 -0.5
1,570,492 + Pf1N1B4_1371 0.66 -1.0
1,570,493 - Pf1N1B4_1371 0.67 +1.6
1,570,493 - Pf1N1B4_1371 0.67 +0.3
1,570,493 - Pf1N1B4_1371 0.67 -0.2
1,570,493 - Pf1N1B4_1371 0.67 +0.3
1,570,493 - Pf1N1B4_1371 0.67 -0.0
1,570,493 - Pf1N1B4_1371 0.67 -0.3
1,570,493 - Pf1N1B4_1371 0.67 -0.4
1,570,493 - Pf1N1B4_1371 0.67 -0.3
1,570,493 - Pf1N1B4_1371 0.67 -0.9
1,570,496 + Pf1N1B4_1371 0.67 -2.3
1,570,496 + Pf1N1B4_1371 0.67 +0.3
1,570,496 + Pf1N1B4_1371 0.67 +0.3
1,570,496 + Pf1N1B4_1371 0.67 -1.7
1,570,496 + Pf1N1B4_1371 0.67 -0.1
1,570,496 + Pf1N1B4_1371 0.67 +1.7
1,570,496 + Pf1N1B4_1371 0.67 -0.7
1,570,496 + Pf1N1B4_1371 0.67 +0.3
1,570,497 - Pf1N1B4_1371 0.67 -0.7
1,570,497 - Pf1N1B4_1371 0.67 -0.1
1,570,497 - Pf1N1B4_1371 0.67 -1.0
1,570,497 - Pf1N1B4_1371 0.67 -1.1
1,570,573 + Pf1N1B4_1371 0.83 +0.3
1,570,656 - +0.6
1,570,714 - -1.0
1,570,719 + +2.3
1,570,719 + -0.3
1,570,719 + -0.0
1,570,719 + -0.5
1,570,720 - -0.2
1,570,720 - +0.3
1,570,720 - +2.9

Or see this region's nucleotide sequence