Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1307

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1306 and Pf1N1B4_1307 are separated by 132 nucleotidesPf1N1B4_1307 and Pf1N1B4_1308 are separated by 49 nucleotidesPf1N1B4_1308 and Pf1N1B4_1309 are separated by 17 nucleotides Pf1N1B4_1306 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 1,489,168 to 1,490,907 _1306 Pf1N1B4_1307 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 1,491,040 to 1,491,492 _1307 Pf1N1B4_1308 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 1,491,542 to 1,492,009 _1308 Pf1N1B4_1309 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 1,492,027 to 1,493,385 _1309 Position (kb) 1491 1492Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1490.072 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.101 kb on + strand, within Pf1N1B4_1306at 1490.102 kb on - strand, within Pf1N1B4_1306at 1490.102 kb on - strand, within Pf1N1B4_1306at 1490.102 kb on - strand, within Pf1N1B4_1306at 1490.102 kb on - strand, within Pf1N1B4_1306at 1490.102 kb on - strand, within Pf1N1B4_1306at 1490.102 kb on - strand, within Pf1N1B4_1306at 1490.102 kb on - strand, within Pf1N1B4_1306at 1490.102 kb on - strand, within Pf1N1B4_1306at 1490.102 kb on - strand, within Pf1N1B4_1306at 1490.236 kb on + strand, within Pf1N1B4_1306at 1490.236 kb on + strand, within Pf1N1B4_1306at 1490.236 kb on + strand, within Pf1N1B4_1306at 1490.236 kb on + strand, within Pf1N1B4_1306at 1490.236 kb on + strand, within Pf1N1B4_1306at 1490.236 kb on + strand, within Pf1N1B4_1306at 1490.236 kb on + strand, within Pf1N1B4_1306at 1490.236 kb on + strand, within Pf1N1B4_1306at 1490.237 kb on - strand, within Pf1N1B4_1306at 1490.237 kb on - strand, within Pf1N1B4_1306at 1490.237 kb on - strand, within Pf1N1B4_1306at 1490.237 kb on - strand, within Pf1N1B4_1306at 1490.359 kb on - strand, within Pf1N1B4_1306at 1490.380 kb on + strand, within Pf1N1B4_1306at 1490.380 kb on + strand, within Pf1N1B4_1306at 1490.380 kb on + strand, within Pf1N1B4_1306at 1490.381 kb on - strand, within Pf1N1B4_1306at 1490.381 kb on - strand, within Pf1N1B4_1306at 1490.382 kb on + strand, within Pf1N1B4_1306at 1490.382 kb on + strand, within Pf1N1B4_1306at 1490.382 kb on + strand, within Pf1N1B4_1306at 1490.382 kb on + strand, within Pf1N1B4_1306at 1490.383 kb on - strand, within Pf1N1B4_1306at 1490.383 kb on - strand, within Pf1N1B4_1306at 1490.434 kb on + strand, within Pf1N1B4_1306at 1490.434 kb on + strand, within Pf1N1B4_1306at 1490.434 kb on + strand, within Pf1N1B4_1306at 1490.434 kb on + strand, within Pf1N1B4_1306at 1490.435 kb on - strand, within Pf1N1B4_1306at 1490.435 kb on - strand, within Pf1N1B4_1306at 1490.435 kb on - strand, within Pf1N1B4_1306at 1490.435 kb on - strand, within Pf1N1B4_1306at 1490.435 kb on - strand, within Pf1N1B4_1306at 1490.435 kb on - strand, within Pf1N1B4_1306at 1490.453 kb on - strand, within Pf1N1B4_1306at 1490.557 kb on - strand, within Pf1N1B4_1306at 1490.773 kb on + strandat 1490.773 kb on + strandat 1490.774 kb on - strandat 1490.774 kb on - strandat 1490.781 kb on - strandat 1490.781 kb on - strandat 1490.781 kb on - strandat 1490.781 kb on - strandat 1490.781 kb on - strandat 1490.781 kb on - strandat 1490.781 kb on - strandat 1490.781 kb on - strandat 1490.921 kb on + strandat 1490.921 kb on + strandat 1491.059 kb on + strandat 1491.182 kb on - strand, within Pf1N1B4_1307at 1491.282 kb on + strand, within Pf1N1B4_1307at 1491.385 kb on + strand, within Pf1N1B4_1307at 1491.385 kb on + strand, within Pf1N1B4_1307at 1491.385 kb on + strand, within Pf1N1B4_1307

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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1,490,072 + Pf1N1B4_1306 0.52 +0.4
1,490,101 + Pf1N1B4_1306 0.54 -1.3
1,490,101 + Pf1N1B4_1306 0.54 -0.2
1,490,101 + Pf1N1B4_1306 0.54 +1.1
1,490,101 + Pf1N1B4_1306 0.54 +0.2
1,490,101 + Pf1N1B4_1306 0.54 -1.0
1,490,101 + Pf1N1B4_1306 0.54 -0.4
1,490,101 + Pf1N1B4_1306 0.54 +0.1
1,490,101 + Pf1N1B4_1306 0.54 -1.9
1,490,101 + Pf1N1B4_1306 0.54 -0.9
1,490,101 + Pf1N1B4_1306 0.54 +1.2
1,490,101 + Pf1N1B4_1306 0.54 -0.4
1,490,101 + Pf1N1B4_1306 0.54 -0.1
1,490,101 + Pf1N1B4_1306 0.54 -0.6
1,490,101 + Pf1N1B4_1306 0.54 +0.1
1,490,101 + Pf1N1B4_1306 0.54 -0.8
1,490,102 - Pf1N1B4_1306 0.54 -0.5
1,490,102 - Pf1N1B4_1306 0.54 -1.4
1,490,102 - Pf1N1B4_1306 0.54 -0.3
1,490,102 - Pf1N1B4_1306 0.54 +0.7
1,490,102 - Pf1N1B4_1306 0.54 +3.1
1,490,102 - Pf1N1B4_1306 0.54 +0.3
1,490,102 - Pf1N1B4_1306 0.54 +0.3
1,490,102 - Pf1N1B4_1306 0.54 -0.3
1,490,102 - Pf1N1B4_1306 0.54 +0.5
1,490,236 + Pf1N1B4_1306 0.61 +1.8
1,490,236 + Pf1N1B4_1306 0.61 +1.0
1,490,236 + Pf1N1B4_1306 0.61 -1.3
1,490,236 + Pf1N1B4_1306 0.61 +0.3
1,490,236 + Pf1N1B4_1306 0.61 +0.3
1,490,236 + Pf1N1B4_1306 0.61 -0.3
1,490,236 + Pf1N1B4_1306 0.61 +0.3
1,490,236 + Pf1N1B4_1306 0.61 -0.7
1,490,237 - Pf1N1B4_1306 0.61 +1.3
1,490,237 - Pf1N1B4_1306 0.61 -0.5
1,490,237 - Pf1N1B4_1306 0.61 +1.3
1,490,237 - Pf1N1B4_1306 0.61 +2.3
1,490,359 - Pf1N1B4_1306 0.68 +0.8
1,490,380 + Pf1N1B4_1306 0.70 +0.8
1,490,380 + Pf1N1B4_1306 0.70 +0.3
1,490,380 + Pf1N1B4_1306 0.70 -0.3
1,490,381 - Pf1N1B4_1306 0.70 +0.3
1,490,381 - Pf1N1B4_1306 0.70 -0.1
1,490,382 + Pf1N1B4_1306 0.70 +0.8
1,490,382 + Pf1N1B4_1306 0.70 +1.8
1,490,382 + Pf1N1B4_1306 0.70 +0.5
1,490,382 + Pf1N1B4_1306 0.70 +1.3
1,490,383 - Pf1N1B4_1306 0.70 +3.3
1,490,383 - Pf1N1B4_1306 0.70 +1.3
1,490,434 + Pf1N1B4_1306 0.73 +1.4
1,490,434 + Pf1N1B4_1306 0.73 -1.1
1,490,434 + Pf1N1B4_1306 0.73 -0.2
1,490,434 + Pf1N1B4_1306 0.73 +1.5
1,490,435 - Pf1N1B4_1306 0.73 -2.7
1,490,435 - Pf1N1B4_1306 0.73 -0.7
1,490,435 - Pf1N1B4_1306 0.73 -0.2
1,490,435 - Pf1N1B4_1306 0.73 -1.1
1,490,435 - Pf1N1B4_1306 0.73 -0.3
1,490,435 - Pf1N1B4_1306 0.73 -1.7
1,490,453 - Pf1N1B4_1306 0.74 +0.7
1,490,557 - Pf1N1B4_1306 0.80 -0.3
1,490,773 + +1.8
1,490,773 + -0.1
1,490,774 - +0.7
1,490,774 - -0.9
1,490,781 - +0.3
1,490,781 - -0.9
1,490,781 - +1.1
1,490,781 - -0.7
1,490,781 - -1.7
1,490,781 - +0.3
1,490,781 - +0.6
1,490,781 - +0.0
1,490,921 + -0.0
1,490,921 + -0.0
1,491,059 + -1.3
1,491,182 - Pf1N1B4_1307 0.31 +0.3
1,491,282 + Pf1N1B4_1307 0.53 -3.1
1,491,385 + Pf1N1B4_1307 0.76 -0.7
1,491,385 + Pf1N1B4_1307 0.76 -2.9
1,491,385 + Pf1N1B4_1307 0.76 -3.3

Or see this region's nucleotide sequence