Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06072 and H281DRAFT_06073 are separated by 86 nucleotides H281DRAFT_06073 and H281DRAFT_06074 are separated by 86 nucleotides H281DRAFT_06074 and H281DRAFT_06075 are separated by 5 nucleotides H281DRAFT_06075 and H281DRAFT_06076 are separated by 406 nucleotides
H281DRAFT_06072: H281DRAFT_06072 - 3-isopropylmalate dehydrogenase, at 88,495 to 89,562
_06072
H281DRAFT_06073: H281DRAFT_06073 - 3-isopropylmalate dehydratase, small subunit, at 89,649 to 90,302
_06073
H281DRAFT_06074: H281DRAFT_06074 - entericidin A, at 90,389 to 90,547
_06074
H281DRAFT_06075: H281DRAFT_06075 - 3-isopropylmalate dehydratase, large subunit, at 90,553 to 91,962
_06075
H281DRAFT_06076: H281DRAFT_06076 - diguanylate cyclase (GGDEF) domain-containing protein, at 92,369 to 94,075
_06076
Position (kb) 90
91
92 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 89.605 kb on + strand at 89.605 kb on + strand at 89.606 kb on - strand at 89.650 kb on + strand at 89.704 kb on + strand at 89.770 kb on + strand, within H281DRAFT_06073 at 89.771 kb on - strand, within H281DRAFT_06073 at 89.875 kb on + strand, within H281DRAFT_06073 at 89.876 kb on - strand, within H281DRAFT_06073 at 89.954 kb on - strand, within H281DRAFT_06073 at 90.296 kb on + strand at 90.297 kb on - strand at 90.497 kb on - strand, within H281DRAFT_06074 at 90.497 kb on - strand, within H281DRAFT_06074 at 90.497 kb on - strand, within H281DRAFT_06074 at 90.768 kb on + strand, within H281DRAFT_06075 at 90.885 kb on - strand, within H281DRAFT_06075 at 90.885 kb on - strand, within H281DRAFT_06075 at 90.885 kb on - strand, within H281DRAFT_06075 at 90.885 kb on - strand, within H281DRAFT_06075 at 90.885 kb on - strand, within H281DRAFT_06075 at 90.885 kb on - strand, within H281DRAFT_06075 at 90.921 kb on + strand at 90.989 kb on + strand, within H281DRAFT_06075 at 90.990 kb on - strand, within H281DRAFT_06075 at 90.990 kb on - strand, within H281DRAFT_06075 at 91.612 kb on - strand, within H281DRAFT_06075 at 91.773 kb on + strand, within H281DRAFT_06075 at 91.774 kb on - strand, within H281DRAFT_06075 at 91.886 kb on + strand at 91.886 kb on + strand at 91.886 kb on + strand at 91.887 kb on - strand at 91.887 kb on - strand at 91.946 kb on + strand at 91.975 kb on - strand at 91.975 kb on - strand at 91.978 kb on - strand at 92.089 kb on + strand at 92.300 kb on + strand at 92.300 kb on + strand at 92.355 kb on + strand at 92.355 kb on + strand at 92.507 kb on + strand at 92.518 kb on + strand at 92.519 kb on - strand at 92.519 kb on - strand at 92.519 kb on - strand at 92.609 kb on + strand, within H281DRAFT_06076 at 92.618 kb on + strand, within H281DRAFT_06076 at 92.619 kb on - strand, within H281DRAFT_06076 at 92.664 kb on - strand, within H281DRAFT_06076 at 92.666 kb on + strand, within H281DRAFT_06076 at 92.667 kb on - strand, within H281DRAFT_06076
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 89,605 + -1.7 89,605 + -5.2 89,606 - +0.0 89,650 + -3.9 89,704 + -4.0 89,770 + H281DRAFT_06073 0.19 -4.8 89,771 - H281DRAFT_06073 0.19 -0.8 89,875 + H281DRAFT_06073 0.35 -5.3 89,876 - H281DRAFT_06073 0.35 -5.1 89,954 - H281DRAFT_06073 0.47 -1.5 90,296 + -4.2 90,297 - -5.1 90,497 - H281DRAFT_06074 0.68 +0.1 90,497 - H281DRAFT_06074 0.68 +0.7 90,497 - H281DRAFT_06074 0.68 -0.2 90,768 + H281DRAFT_06075 0.15 -3.2 90,885 - H281DRAFT_06075 0.24 -3.1 90,885 - H281DRAFT_06075 0.24 -3.3 90,885 - H281DRAFT_06075 0.24 -4.8 90,885 - H281DRAFT_06075 0.24 -4.3 90,885 - H281DRAFT_06075 0.24 -4.2 90,885 - H281DRAFT_06075 0.24 -2.5 90,921 + -0.0 90,989 + H281DRAFT_06075 0.31 -5.1 90,990 - H281DRAFT_06075 0.31 -3.3 90,990 - H281DRAFT_06075 0.31 -2.4 91,612 - H281DRAFT_06075 0.75 -3.0 91,773 + H281DRAFT_06075 0.87 -2.8 91,774 - H281DRAFT_06075 0.87 -2.0 91,886 + -4.8 91,886 + -3.7 91,886 + -4.1 91,887 - -3.1 91,887 - -3.3 91,946 + -5.3 91,975 - +1.4 91,975 - +0.0 91,978 - -0.4 92,089 + +0.2 92,300 + -0.0 92,300 + +0.4 92,355 + -1.1 92,355 + +2.0 92,507 + +0.6 92,518 + +2.0 92,519 - -0.7 92,519 - +0.5 92,519 - +2.0 92,609 + H281DRAFT_06076 0.14 -0.0 92,618 + H281DRAFT_06076 0.15 +0.5 92,619 - H281DRAFT_06076 0.15 +1.0 92,664 - H281DRAFT_06076 0.17 +0.3 92,666 + H281DRAFT_06076 0.17 -0.9 92,667 - H281DRAFT_06076 0.17 +0.2
Or see this region's nucleotide sequence