Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06067

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06065 and H281DRAFT_06066 overlap by 4 nucleotidesH281DRAFT_06066 and H281DRAFT_06067 are separated by 11 nucleotidesH281DRAFT_06067 and H281DRAFT_06068 are separated by 52 nucleotidesH281DRAFT_06068 and H281DRAFT_06069 overlap by 11 nucleotides H281DRAFT_06065: H281DRAFT_06065 - tryptophan synthase, alpha chain, at 79,947 to 80,813 _06065 H281DRAFT_06066: H281DRAFT_06066 - site-specific DNA-methyltransferase (adenine-specific), at 80,810 to 81,721 _06066 H281DRAFT_06067: H281DRAFT_06067 - tryptophan synthase, beta chain, at 81,733 to 82,926 _06067 H281DRAFT_06068: H281DRAFT_06068 - phosphoribosylanthranilate isomerase, at 82,979 to 83,704 _06068 H281DRAFT_06069: H281DRAFT_06069 - tRNA pseudouridine38-40 synthase, at 83,694 to 84,512 _06069 Position (kb) 81 82 83Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 80.910 kb on + strand, within H281DRAFT_06066at 81.130 kb on + strand, within H281DRAFT_06066at 81.132 kb on + strand, within H281DRAFT_06066at 81.132 kb on + strand, within H281DRAFT_06066at 81.133 kb on - strand, within H281DRAFT_06066at 81.133 kb on - strand, within H281DRAFT_06066at 81.403 kb on + strand, within H281DRAFT_06066at 81.405 kb on + strand, within H281DRAFT_06066at 81.405 kb on + strand, within H281DRAFT_06066at 81.406 kb on - strand, within H281DRAFT_06066at 81.406 kb on - strand, within H281DRAFT_06066at 81.406 kb on - strand, within H281DRAFT_06066at 81.406 kb on - strand, within H281DRAFT_06066at 81.406 kb on - strand, within H281DRAFT_06066at 81.525 kb on + strand, within H281DRAFT_06066at 81.575 kb on + strand, within H281DRAFT_06066at 81.576 kb on - strand, within H281DRAFT_06066at 81.576 kb on - strand, within H281DRAFT_06066at 81.576 kb on - strand, within H281DRAFT_06066at 81.677 kb on + strandat 81.677 kb on + strandat 81.678 kb on - strandat 81.765 kb on + strandat 81.848 kb on + strandat 81.939 kb on + strand, within H281DRAFT_06067at 81.948 kb on - strand, within H281DRAFT_06067at 82.002 kb on - strand, within H281DRAFT_06067at 82.064 kb on + strand, within H281DRAFT_06067at 82.064 kb on + strand, within H281DRAFT_06067at 82.065 kb on - strand, within H281DRAFT_06067at 82.065 kb on - strand, within H281DRAFT_06067at 82.068 kb on + strand, within H281DRAFT_06067at 82.068 kb on + strand, within H281DRAFT_06067at 82.068 kb on + strand, within H281DRAFT_06067at 82.069 kb on - strand, within H281DRAFT_06067at 82.069 kb on - strand, within H281DRAFT_06067at 82.207 kb on - strand, within H281DRAFT_06067at 82.360 kb on - strand, within H281DRAFT_06067at 82.361 kb on + strand, within H281DRAFT_06067at 82.361 kb on + strand, within H281DRAFT_06067at 82.361 kb on + strand, within H281DRAFT_06067at 82.361 kb on + strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.362 kb on - strand, within H281DRAFT_06067at 82.520 kb on + strand, within H281DRAFT_06067at 82.520 kb on + strand, within H281DRAFT_06067at 82.520 kb on + strand, within H281DRAFT_06067at 82.520 kb on + strand, within H281DRAFT_06067at 82.521 kb on - strand, within H281DRAFT_06067at 82.521 kb on - strand, within H281DRAFT_06067at 82.659 kb on + strand, within H281DRAFT_06067at 82.660 kb on - strand, within H281DRAFT_06067at 82.769 kb on + strand, within H281DRAFT_06067at 82.787 kb on + strand, within H281DRAFT_06067at 82.838 kb on - strandat 82.838 kb on - strandat 82.939 kb on + strandat 82.940 kb on - strandat 83.057 kb on + strandat 83.057 kb on + strand, within H281DRAFT_06068at 83.176 kb on + strand, within H281DRAFT_06068at 83.177 kb on - strand, within H281DRAFT_06068at 83.257 kb on - strand, within H281DRAFT_06068at 83.273 kb on + strand, within H281DRAFT_06068at 83.571 kb on - strand, within H281DRAFT_06068at 83.724 kb on + strandat 83.725 kb on - strandat 83.730 kb on - strandat 83.800 kb on + strand, within H281DRAFT_06069at 83.801 kb on - strand, within H281DRAFT_06069at 83.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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80,910 + H281DRAFT_06066 0.11 -1.1
81,130 + H281DRAFT_06066 0.35 -1.2
81,132 + H281DRAFT_06066 0.35 +0.2
81,132 + H281DRAFT_06066 0.35 -0.8
81,133 - H281DRAFT_06066 0.35 -0.3
81,133 - H281DRAFT_06066 0.35 -0.1
81,403 + H281DRAFT_06066 0.65 -0.5
81,405 + H281DRAFT_06066 0.65 -3.5
81,405 + H281DRAFT_06066 0.65 -1.3
81,406 - H281DRAFT_06066 0.65 -0.7
81,406 - H281DRAFT_06066 0.65 -0.6
81,406 - H281DRAFT_06066 0.65 -0.5
81,406 - H281DRAFT_06066 0.65 -0.7
81,406 - H281DRAFT_06066 0.65 -0.1
81,525 + H281DRAFT_06066 0.78 +0.0
81,575 + H281DRAFT_06066 0.84 -0.8
81,576 - H281DRAFT_06066 0.84 -0.2
81,576 - H281DRAFT_06066 0.84 -1.4
81,576 - H281DRAFT_06066 0.84 -1.8
81,677 + -1.5
81,677 + -2.1
81,678 - +0.2
81,765 + -3.2
81,848 + -3.2
81,939 + H281DRAFT_06067 0.17 -3.5
81,948 - H281DRAFT_06067 0.18 -2.7
82,002 - H281DRAFT_06067 0.23 -2.6
82,064 + H281DRAFT_06067 0.28 -3.6
82,064 + H281DRAFT_06067 0.28 -4.1
82,065 - H281DRAFT_06067 0.28 -2.2
82,065 - H281DRAFT_06067 0.28 -0.6
82,068 + H281DRAFT_06067 0.28 -3.4
82,068 + H281DRAFT_06067 0.28 -3.0
82,068 + H281DRAFT_06067 0.28 -5.8
82,069 - H281DRAFT_06067 0.28 -1.6
82,069 - H281DRAFT_06067 0.28 -3.4
82,207 - H281DRAFT_06067 0.40 -5.6
82,360 - H281DRAFT_06067 0.53 -4.2
82,361 + H281DRAFT_06067 0.53 -3.0
82,361 + H281DRAFT_06067 0.53 -3.7
82,361 + H281DRAFT_06067 0.53 -4.5
82,361 + H281DRAFT_06067 0.53 -0.0
82,362 - H281DRAFT_06067 0.53 -3.9
82,362 - H281DRAFT_06067 0.53 -2.2
82,362 - H281DRAFT_06067 0.53 -3.3
82,362 - H281DRAFT_06067 0.53 -4.2
82,362 - H281DRAFT_06067 0.53 -4.4
82,362 - H281DRAFT_06067 0.53 -3.6
82,362 - H281DRAFT_06067 0.53 -3.8
82,520 + H281DRAFT_06067 0.66 -5.2
82,520 + H281DRAFT_06067 0.66 -5.2
82,520 + H281DRAFT_06067 0.66 -3.6
82,520 + H281DRAFT_06067 0.66 -4.3
82,521 - H281DRAFT_06067 0.66 -4.9
82,521 - H281DRAFT_06067 0.66 -2.8
82,659 + H281DRAFT_06067 0.78 -4.3
82,660 - H281DRAFT_06067 0.78 -2.2
82,769 + H281DRAFT_06067 0.87 -5.3
82,787 + H281DRAFT_06067 0.88 -4.2
82,838 - -4.8
82,838 - -3.8
82,939 + -2.2
82,940 - -0.5
83,057 + +1.0
83,057 + H281DRAFT_06068 0.11 -2.5
83,176 + H281DRAFT_06068 0.27 -2.1
83,177 - H281DRAFT_06068 0.27 -5.6
83,257 - H281DRAFT_06068 0.38 -4.1
83,273 + H281DRAFT_06068 0.40 -3.4
83,571 - H281DRAFT_06068 0.82 -5.1
83,724 + -0.1
83,725 - -0.9
83,730 - +0.2
83,800 + H281DRAFT_06069 0.13 +0.4
83,801 - H281DRAFT_06069 0.13 +0.7
83,900 - +2.3

Or see this region's nucleotide sequence