Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06024

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06022 and H281DRAFT_06023 are separated by 88 nucleotidesH281DRAFT_06023 and H281DRAFT_06024 are separated by 39 nucleotidesH281DRAFT_06024 and H281DRAFT_06025 are separated by 97 nucleotidesH281DRAFT_06025 and H281DRAFT_06026 overlap by 4 nucleotides H281DRAFT_06022: H281DRAFT_06022 - DNA polymerase I, at 26,253 to 28,994 _06022 H281DRAFT_06023: H281DRAFT_06023 - hypothetical protein, at 29,083 to 29,739 _06023 H281DRAFT_06024: H281DRAFT_06024 - transcriptional regulator, LysR family, at 29,779 to 30,711 _06024 H281DRAFT_06025: H281DRAFT_06025 - chromate transporter, at 30,809 to 31,378 _06025 H281DRAFT_06026: H281DRAFT_06026 - chromate transporter, at 31,375 to 31,902 _06026 Position (kb) 29 30 31Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 28.995 kb on + strandat 29.094 kb on + strandat 29.095 kb on - strandat 29.155 kb on + strand, within H281DRAFT_06023at 29.155 kb on + strand, within H281DRAFT_06023at 29.188 kb on + strand, within H281DRAFT_06023at 29.192 kb on - strand, within H281DRAFT_06023at 29.192 kb on - strandat 29.407 kb on - strand, within H281DRAFT_06023at 29.481 kb on - strand, within H281DRAFT_06023at 29.481 kb on - strand, within H281DRAFT_06023at 29.481 kb on - strand, within H281DRAFT_06023at 29.672 kb on - strand, within H281DRAFT_06023at 29.731 kb on + strandat 29.732 kb on - strandat 29.738 kb on - strandat 29.738 kb on - strandat 30.025 kb on + strand, within H281DRAFT_06024at 30.026 kb on - strand, within H281DRAFT_06024at 30.026 kb on - strand, within H281DRAFT_06024at 30.026 kb on - strand, within H281DRAFT_06024at 30.048 kb on - strand, within H281DRAFT_06024at 30.048 kb on - strand, within H281DRAFT_06024at 30.048 kb on - strand, within H281DRAFT_06024at 30.452 kb on - strand, within H281DRAFT_06024at 30.507 kb on - strand, within H281DRAFT_06024at 30.723 kb on + strandat 31.136 kb on + strandat 31.136 kb on + strand, within H281DRAFT_06025at 31.250 kb on - strand, within H281DRAFT_06025at 31.322 kb on - strandat 31.322 kb on - strandat 31.352 kb on + strandat 31.352 kb on + strandat 31.353 kb on - strandat 31.353 kb on - strandat 31.353 kb on - strandat 31.353 kb on - strandat 31.446 kb on + strand, within H281DRAFT_06026at 31.446 kb on + strand, within H281DRAFT_06026at 31.652 kb on + strand, within H281DRAFT_06026at 31.653 kb on - strand, within H281DRAFT_06026at 31.653 kb on - strand, within H281DRAFT_06026

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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28,995 + -0.9
29,094 + -2.2
29,095 - -1.8
29,155 + H281DRAFT_06023 0.11 -2.4
29,155 + H281DRAFT_06023 0.11 -2.5
29,188 + H281DRAFT_06023 0.16 -0.5
29,192 - H281DRAFT_06023 0.17 -1.0
29,192 - +1.0
29,407 - H281DRAFT_06023 0.49 -0.6
29,481 - H281DRAFT_06023 0.61 -3.9
29,481 - H281DRAFT_06023 0.61 -3.8
29,481 - H281DRAFT_06023 0.61 -3.0
29,672 - H281DRAFT_06023 0.90 -1.8
29,731 + +0.0
29,732 - +0.3
29,738 - +0.2
29,738 - -0.6
30,025 + H281DRAFT_06024 0.26 +0.1
30,026 - H281DRAFT_06024 0.26 -0.7
30,026 - H281DRAFT_06024 0.26 +0.5
30,026 - H281DRAFT_06024 0.26 -0.8
30,048 - H281DRAFT_06024 0.29 +0.5
30,048 - H281DRAFT_06024 0.29 -2.4
30,048 - H281DRAFT_06024 0.29 +0.4
30,452 - H281DRAFT_06024 0.72 -0.8
30,507 - H281DRAFT_06024 0.78 -0.0
30,723 + +0.4
31,136 + -0.0
31,136 + H281DRAFT_06025 0.57 +0.0
31,250 - H281DRAFT_06025 0.77 +0.3
31,322 - +0.9
31,322 - +0.4
31,352 + -0.6
31,352 + -0.5
31,353 - +0.1
31,353 - +0.5
31,353 - +0.1
31,353 - -0.3
31,446 + H281DRAFT_06026 0.13 +0.3
31,446 + H281DRAFT_06026 0.13 -1.8
31,652 + H281DRAFT_06026 0.52 -0.8
31,653 - H281DRAFT_06026 0.53 -0.2
31,653 - H281DRAFT_06026 0.53 +0.9

Or see this region's nucleotide sequence