Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05993

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05992 and H281DRAFT_05993 are separated by 1 nucleotidesH281DRAFT_05993 and H281DRAFT_05994 are separated by 143 nucleotides H281DRAFT_05992: H281DRAFT_05992 - MFS transporter, MHS family, proline/betaine transporter, at 135,227 to 136,528 _05992 H281DRAFT_05993: H281DRAFT_05993 - Kynureninase, at 136,530 to 137,663 _05993 H281DRAFT_05994: H281DRAFT_05994 - Cupin domain protein, at 137,807 to 138,907 _05994 Position (kb) 136 137 138Strain fitness (log2 ratio) -1 0 1 2at 135.619 kb on + strand, within H281DRAFT_05992at 135.820 kb on + strand, within H281DRAFT_05992at 135.821 kb on - strand, within H281DRAFT_05992at 135.854 kb on + strand, within H281DRAFT_05992at 135.855 kb on - strand, within H281DRAFT_05992at 135.855 kb on - strand, within H281DRAFT_05992at 136.287 kb on - strand, within H281DRAFT_05992at 136.455 kb on - strandat 136.499 kb on + strandat 136.527 kb on - strandat 136.527 kb on - strandat 136.930 kb on - strand, within H281DRAFT_05993at 137.956 kb on - strand, within H281DRAFT_05994at 138.542 kb on + strand, within H281DRAFT_05994

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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135,619 + H281DRAFT_05992 0.30 +0.2
135,820 + H281DRAFT_05992 0.46 +0.6
135,821 - H281DRAFT_05992 0.46 +0.3
135,854 + H281DRAFT_05992 0.48 +0.5
135,855 - H281DRAFT_05992 0.48 +1.3
135,855 - H281DRAFT_05992 0.48 +0.6
136,287 - H281DRAFT_05992 0.81 +0.3
136,455 - -0.7
136,499 + +0.4
136,527 - -0.3
136,527 - +0.3
136,930 - H281DRAFT_05993 0.35 -0.0
137,956 - H281DRAFT_05994 0.14 -0.3
138,542 + H281DRAFT_05994 0.67 +1.8

Or see this region's nucleotide sequence