Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05989

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05988 and H281DRAFT_05989 are separated by 295 nucleotidesH281DRAFT_05989 and H281DRAFT_05990 are separated by 140 nucleotides H281DRAFT_05988: H281DRAFT_05988 - Ubiquinone/menaquinone biosynthesis C-methylase UbiE, at 130,947 to 131,810 _05988 H281DRAFT_05989: H281DRAFT_05989 - Sortase and related acyltransferases, at 132,106 to 132,621 _05989 H281DRAFT_05990: H281DRAFT_05990 - DNA-binding transcriptional regulator, LysR family, at 132,762 to 133,757 _05990 Position (kb) 132 133Strain fitness (log2 ratio) -2 -1 0 1at 132.023 kb on + strandat 132.023 kb on + strandat 132.024 kb on - strandat 132.056 kb on + strandat 132.203 kb on + strand, within H281DRAFT_05989at 132.203 kb on + strand, within H281DRAFT_05989at 132.203 kb on + strand, within H281DRAFT_05989at 132.204 kb on - strand, within H281DRAFT_05989at 132.206 kb on + strand, within H281DRAFT_05989at 132.206 kb on + strand, within H281DRAFT_05989at 132.206 kb on + strand, within H281DRAFT_05989at 132.206 kb on + strand, within H281DRAFT_05989at 132.206 kb on + strand, within H281DRAFT_05989at 132.207 kb on - strand, within H281DRAFT_05989at 132.207 kb on - strand, within H281DRAFT_05989at 132.384 kb on - strand, within H281DRAFT_05989at 132.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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132,023 + +1.3
132,023 + +0.5
132,024 - +0.4
132,056 + +0.5
132,203 + H281DRAFT_05989 0.19 +0.3
132,203 + H281DRAFT_05989 0.19 -0.2
132,203 + H281DRAFT_05989 0.19 +0.2
132,204 - H281DRAFT_05989 0.19 -0.7
132,206 + H281DRAFT_05989 0.19 +0.0
132,206 + H281DRAFT_05989 0.19 -1.2
132,206 + H281DRAFT_05989 0.19 +0.1
132,206 + H281DRAFT_05989 0.19 -1.8
132,206 + H281DRAFT_05989 0.19 +0.0
132,207 - H281DRAFT_05989 0.20 +0.1
132,207 - H281DRAFT_05989 0.20 +1.6
132,384 - H281DRAFT_05989 0.54 -1.0
132,663 - -0.8

Or see this region's nucleotide sequence