Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05914

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05913 and H281DRAFT_05914 are separated by 505 nucleotidesH281DRAFT_05914 and H281DRAFT_05915 are separated by 81 nucleotidesH281DRAFT_05915 and H281DRAFT_05916 are separated by 265 nucleotides H281DRAFT_05913: H281DRAFT_05913 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 46,570 to 47,559 _05913 H281DRAFT_05914: H281DRAFT_05914 - hypothetical protein, at 48,065 to 48,724 _05914 H281DRAFT_05915: H281DRAFT_05915 - hypothetical protein, at 48,806 to 49,144 _05915 H281DRAFT_05916: H281DRAFT_05916 - hypothetical protein, at 49,410 to 49,718 _05916 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 47.101 kb on + strand, within H281DRAFT_05913at 47.119 kb on + strand, within H281DRAFT_05913at 47.189 kb on + strand, within H281DRAFT_05913at 47.263 kb on - strand, within H281DRAFT_05913at 47.263 kb on - strand, within H281DRAFT_05913at 47.265 kb on + strand, within H281DRAFT_05913at 47.265 kb on + strand, within H281DRAFT_05913at 47.265 kb on + strand, within H281DRAFT_05913at 47.266 kb on - strand, within H281DRAFT_05913at 47.266 kb on - strand, within H281DRAFT_05913at 47.476 kb on + strandat 47.476 kb on + strandat 47.531 kb on + strandat 47.631 kb on - strandat 47.782 kb on + strandat 48.076 kb on + strandat 48.579 kb on + strand, within H281DRAFT_05914at 48.580 kb on - strand, within H281DRAFT_05914at 48.708 kb on + strandat 48.999 kb on + strand, within H281DRAFT_05915at 49.183 kb on - strandat 49.183 kb on - strandat 49.307 kb on + strandat 49.353 kb on - strandat 49.432 kb on + strandat 49.433 kb on - strandat 49.435 kb on + strandat 49.436 kb on - strandat 49.567 kb on - strand, within H281DRAFT_05916at 49.567 kb on - strand, within H281DRAFT_05916

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
47,101 + H281DRAFT_05913 0.54 +1.1
47,119 + H281DRAFT_05913 0.55 -0.2
47,189 + H281DRAFT_05913 0.63 +0.1
47,263 - H281DRAFT_05913 0.70 -0.2
47,263 - H281DRAFT_05913 0.70 -0.2
47,265 + H281DRAFT_05913 0.70 +0.2
47,265 + H281DRAFT_05913 0.70 -0.1
47,265 + H281DRAFT_05913 0.70 +0.1
47,266 - H281DRAFT_05913 0.70 +1.5
47,266 - H281DRAFT_05913 0.70 -1.0
47,476 + -2.0
47,476 + +0.7
47,531 + -0.6
47,631 - +0.0
47,782 + +0.6
48,076 + +0.8
48,579 + H281DRAFT_05914 0.78 +1.4
48,580 - H281DRAFT_05914 0.78 +0.1
48,708 + -2.7
48,999 + H281DRAFT_05915 0.57 -0.2
49,183 - +2.7
49,183 - -0.1
49,307 + -0.0
49,353 - +0.4
49,432 + -0.2
49,433 - +0.3
49,435 + +1.1
49,436 - +0.3
49,567 - H281DRAFT_05916 0.51 +0.1
49,567 - H281DRAFT_05916 0.51 +0.2

Or see this region's nucleotide sequence