Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05431

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05429 and H281DRAFT_05430 are separated by 25 nucleotidesH281DRAFT_05430 and H281DRAFT_05431 overlap by 4 nucleotidesH281DRAFT_05431 and H281DRAFT_05432 overlap by 8 nucleotidesH281DRAFT_05432 and H281DRAFT_05433 are separated by 73 nucleotides H281DRAFT_05429: H281DRAFT_05429 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit, at 4,703 to 6,001 _05429 H281DRAFT_05430: H281DRAFT_05430 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 6,027 to 6,734 _05430 H281DRAFT_05431: H281DRAFT_05431 - amino acid/amide ABC transporter membrane protein 2, HAAT family /amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 6,731 to 8,593 _05431 H281DRAFT_05432: H281DRAFT_05432 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 8,586 to 9,419 _05432 H281DRAFT_05433: H281DRAFT_05433 - amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-), at 9,493 to 10,656 _05433 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -2 -1 0 1at 5.982 kb on + strandat 6.001 kb on + strandat 6.069 kb on - strandat 6.340 kb on + strand, within H281DRAFT_05430at 6.340 kb on + strand, within H281DRAFT_05430at 6.432 kb on + strand, within H281DRAFT_05430at 6.433 kb on - strand, within H281DRAFT_05430at 6.691 kb on + strandat 6.691 kb on + strandat 6.692 kb on - strandat 6.793 kb on - strandat 6.802 kb on + strandat 7.217 kb on + strand, within H281DRAFT_05431at 7.217 kb on + strand, within H281DRAFT_05431at 7.217 kb on + strand, within H281DRAFT_05431at 7.409 kb on + strand, within H281DRAFT_05431at 7.409 kb on + strand, within H281DRAFT_05431at 7.526 kb on + strand, within H281DRAFT_05431at 7.579 kb on + strand, within H281DRAFT_05431at 7.646 kb on + strand, within H281DRAFT_05431at 7.646 kb on + strand, within H281DRAFT_05431at 7.991 kb on + strand, within H281DRAFT_05431at 8.010 kb on - strand, within H281DRAFT_05431at 8.074 kb on - strand, within H281DRAFT_05431at 8.375 kb on - strand, within H281DRAFT_05431at 8.378 kb on + strand, within H281DRAFT_05431at 8.434 kb on - strandat 8.823 kb on + strandat 8.823 kb on + strand, within H281DRAFT_05432at 8.824 kb on - strand, within H281DRAFT_05432at 8.979 kb on - strand, within H281DRAFT_05432at 9.257 kb on + strand, within H281DRAFT_05432at 9.258 kb on - strand, within H281DRAFT_05432at 9.258 kb on - strand, within H281DRAFT_05432at 9.289 kb on + strand, within H281DRAFT_05432at 9.338 kb on + strandat 9.357 kb on + strandat 9.358 kb on - strandat 9.374 kb on + strandat 9.374 kb on + strandat 9.454 kb on - strandat 9.454 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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5,982 + +0.1
6,001 + +0.0
6,069 - +0.5
6,340 + H281DRAFT_05430 0.44 +0.1
6,340 + H281DRAFT_05430 0.44 -0.0
6,432 + H281DRAFT_05430 0.57 -0.2
6,433 - H281DRAFT_05430 0.57 -1.9
6,691 + +0.4
6,691 + +1.0
6,692 - +0.5
6,793 - -0.0
6,802 + -0.6
7,217 + H281DRAFT_05431 0.26 +0.6
7,217 + H281DRAFT_05431 0.26 -0.2
7,217 + H281DRAFT_05431 0.26 -0.3
7,409 + H281DRAFT_05431 0.36 -0.1
7,409 + H281DRAFT_05431 0.36 +0.4
7,526 + H281DRAFT_05431 0.43 -0.6
7,579 + H281DRAFT_05431 0.46 +1.0
7,646 + H281DRAFT_05431 0.49 -0.2
7,646 + H281DRAFT_05431 0.49 -0.5
7,991 + H281DRAFT_05431 0.68 -0.2
8,010 - H281DRAFT_05431 0.69 +0.8
8,074 - H281DRAFT_05431 0.72 +0.6
8,375 - H281DRAFT_05431 0.88 +0.8
8,378 + H281DRAFT_05431 0.88 +0.2
8,434 - +0.9
8,823 + +0.9
8,823 + H281DRAFT_05432 0.28 -0.3
8,824 - H281DRAFT_05432 0.29 +0.1
8,979 - H281DRAFT_05432 0.47 -1.0
9,257 + H281DRAFT_05432 0.80 -1.2
9,258 - H281DRAFT_05432 0.81 -0.6
9,258 - H281DRAFT_05432 0.81 -0.8
9,289 + H281DRAFT_05432 0.84 -0.6
9,338 + -0.4
9,357 + +0.9
9,358 - -0.3
9,374 + +0.3
9,374 + -0.2
9,454 - -0.5
9,454 - +0.4

Or see this region's nucleotide sequence