Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05394

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05393 and H281DRAFT_05394 are separated by 119 nucleotidesH281DRAFT_05394 and H281DRAFT_05395 are separated by 300 nucleotides H281DRAFT_05393: H281DRAFT_05393 - Outer membrane protein (porin), at 156,174 to 157,334 _05393 H281DRAFT_05394: H281DRAFT_05394 - hypothetical protein, at 157,454 to 157,753 _05394 H281DRAFT_05395: H281DRAFT_05395 - Protein of unknown function (DUF3465), at 158,054 to 158,470 _05395 Position (kb) 157 158Strain fitness (log2 ratio) -2 -1 0 1 2at 156.461 kb on + strand, within H281DRAFT_05393at 156.461 kb on + strand, within H281DRAFT_05393at 156.461 kb on + strand, within H281DRAFT_05393at 156.462 kb on - strand, within H281DRAFT_05393at 156.462 kb on - strand, within H281DRAFT_05393at 156.462 kb on - strand, within H281DRAFT_05393at 156.462 kb on - strand, within H281DRAFT_05393at 156.549 kb on + strand, within H281DRAFT_05393at 156.550 kb on - strand, within H281DRAFT_05393at 156.607 kb on - strand, within H281DRAFT_05393at 156.658 kb on - strand, within H281DRAFT_05393at 156.658 kb on - strand, within H281DRAFT_05393at 156.699 kb on + strandat 156.699 kb on + strand, within H281DRAFT_05393at 156.700 kb on - strand, within H281DRAFT_05393at 156.741 kb on + strand, within H281DRAFT_05393at 156.742 kb on - strand, within H281DRAFT_05393at 156.743 kb on + strand, within H281DRAFT_05393at 156.743 kb on + strand, within H281DRAFT_05393at 156.759 kb on + strand, within H281DRAFT_05393at 156.759 kb on + strand, within H281DRAFT_05393at 156.759 kb on + strand, within H281DRAFT_05393at 156.760 kb on - strand, within H281DRAFT_05393at 156.766 kb on - strand, within H281DRAFT_05393at 156.793 kb on - strand, within H281DRAFT_05393at 156.797 kb on - strand, within H281DRAFT_05393at 156.807 kb on - strand, within H281DRAFT_05393at 156.878 kb on - strand, within H281DRAFT_05393at 156.893 kb on + strand, within H281DRAFT_05393at 156.894 kb on - strand, within H281DRAFT_05393at 156.894 kb on - strand, within H281DRAFT_05393at 156.894 kb on - strand, within H281DRAFT_05393at 156.899 kb on + strand, within H281DRAFT_05393at 156.899 kb on + strand, within H281DRAFT_05393at 156.946 kb on - strand, within H281DRAFT_05393at 156.970 kb on - strand, within H281DRAFT_05393at 157.023 kb on + strand, within H281DRAFT_05393at 157.086 kb on + strand, within H281DRAFT_05393at 157.086 kb on + strand, within H281DRAFT_05393at 157.087 kb on - strand, within H281DRAFT_05393at 157.087 kb on - strand, within H281DRAFT_05393at 157.087 kb on - strand, within H281DRAFT_05393at 157.094 kb on + strand, within H281DRAFT_05393at 157.095 kb on - strand, within H281DRAFT_05393at 157.095 kb on - strand, within H281DRAFT_05393at 157.095 kb on - strand, within H281DRAFT_05393at 157.107 kb on + strand, within H281DRAFT_05393at 157.168 kb on - strand, within H281DRAFT_05393at 157.168 kb on - strand, within H281DRAFT_05393at 157.194 kb on + strand, within H281DRAFT_05393at 157.194 kb on + strand, within H281DRAFT_05393at 157.195 kb on - strand, within H281DRAFT_05393at 157.195 kb on - strand, within H281DRAFT_05393at 157.259 kb on + strandat 157.260 kb on - strandat 157.287 kb on - strandat 157.332 kb on + strandat 157.370 kb on - strandat 157.590 kb on + strand, within H281DRAFT_05394at 157.591 kb on - strand, within H281DRAFT_05394at 157.771 kb on + strandat 157.771 kb on + strandat 157.771 kb on + strandat 157.772 kb on - strandat 157.772 kb on - strandat 157.772 kb on - strandat 157.848 kb on + strandat 157.908 kb on + strandat 157.909 kb on - strandat 157.909 kb on - strandat 157.909 kb on - strandat 157.923 kb on + strandat 157.938 kb on - strandat 157.974 kb on - strandat 158.093 kb on + strandat 158.094 kb on - strandat 158.148 kb on + strand, within H281DRAFT_05395at 158.148 kb on + strand, within H281DRAFT_05395at 158.148 kb on + strand, within H281DRAFT_05395at 158.191 kb on + strand, within H281DRAFT_05395at 158.191 kb on + strand, within H281DRAFT_05395at 158.192 kb on - strand, within H281DRAFT_05395at 158.192 kb on - strand, within H281DRAFT_05395at 158.351 kb on + strand, within H281DRAFT_05395at 158.352 kb on - strand, within H281DRAFT_05395at 158.352 kb on - strand, within H281DRAFT_05395at 158.373 kb on - strand, within H281DRAFT_05395at 158.439 kb on - strandat 158.448 kb on - strandat 158.549 kb on + strandat 158.616 kb on - strandat 158.668 kb on - strandat 158.686 kb on + strandat 158.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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156,461 + H281DRAFT_05393 0.25 -0.5
156,461 + H281DRAFT_05393 0.25 -0.3
156,461 + H281DRAFT_05393 0.25 -0.4
156,462 - H281DRAFT_05393 0.25 +0.9
156,462 - H281DRAFT_05393 0.25 -0.6
156,462 - H281DRAFT_05393 0.25 +0.2
156,462 - H281DRAFT_05393 0.25 +1.4
156,549 + H281DRAFT_05393 0.32 +0.1
156,550 - H281DRAFT_05393 0.32 +0.4
156,607 - H281DRAFT_05393 0.37 +0.2
156,658 - H281DRAFT_05393 0.42 -0.6
156,658 - H281DRAFT_05393 0.42 -2.4
156,699 + -2.1
156,699 + H281DRAFT_05393 0.45 +0.2
156,700 - H281DRAFT_05393 0.45 +0.2
156,741 + H281DRAFT_05393 0.49 +0.4
156,742 - H281DRAFT_05393 0.49 -0.2
156,743 + H281DRAFT_05393 0.49 +2.3
156,743 + H281DRAFT_05393 0.49 -0.3
156,759 + H281DRAFT_05393 0.50 +0.6
156,759 + H281DRAFT_05393 0.50 +1.5
156,759 + H281DRAFT_05393 0.50 +1.7
156,760 - H281DRAFT_05393 0.50 +0.4
156,766 - H281DRAFT_05393 0.51 -0.4
156,793 - H281DRAFT_05393 0.53 +0.3
156,797 - H281DRAFT_05393 0.54 -0.3
156,807 - H281DRAFT_05393 0.55 -0.9
156,878 - H281DRAFT_05393 0.61 +0.0
156,893 + H281DRAFT_05393 0.62 +0.6
156,894 - H281DRAFT_05393 0.62 -1.4
156,894 - H281DRAFT_05393 0.62 -0.3
156,894 - H281DRAFT_05393 0.62 -0.5
156,899 + H281DRAFT_05393 0.62 -0.7
156,899 + H281DRAFT_05393 0.62 -0.2
156,946 - H281DRAFT_05393 0.66 +0.2
156,970 - H281DRAFT_05393 0.69 -0.9
157,023 + H281DRAFT_05393 0.73 -0.2
157,086 + H281DRAFT_05393 0.79 -0.1
157,086 + H281DRAFT_05393 0.79 -0.1
157,087 - H281DRAFT_05393 0.79 -1.4
157,087 - H281DRAFT_05393 0.79 -0.5
157,087 - H281DRAFT_05393 0.79 -0.4
157,094 + H281DRAFT_05393 0.79 -1.7
157,095 - H281DRAFT_05393 0.79 -0.4
157,095 - H281DRAFT_05393 0.79 -0.3
157,095 - H281DRAFT_05393 0.79 -0.1
157,107 + H281DRAFT_05393 0.80 -0.2
157,168 - H281DRAFT_05393 0.86 +0.5
157,168 - H281DRAFT_05393 0.86 -0.9
157,194 + H281DRAFT_05393 0.88 +2.0
157,194 + H281DRAFT_05393 0.88 +0.1
157,195 - H281DRAFT_05393 0.88 -1.1
157,195 - H281DRAFT_05393 0.88 -0.4
157,259 + -0.2
157,260 - -1.3
157,287 - +0.3
157,332 + +0.9
157,370 - -0.2
157,590 + H281DRAFT_05394 0.45 -0.2
157,591 - H281DRAFT_05394 0.46 -0.6
157,771 + -0.4
157,771 + -0.6
157,771 + +1.0
157,772 - -0.4
157,772 - -0.6
157,772 - -0.3
157,848 + +0.4
157,908 + -1.5
157,909 - +0.7
157,909 - +0.4
157,909 - +0.3
157,923 + -0.3
157,938 - -0.6
157,974 - +0.2
158,093 + -0.8
158,094 - -0.4
158,148 + H281DRAFT_05395 0.23 +0.1
158,148 + H281DRAFT_05395 0.23 -0.1
158,148 + H281DRAFT_05395 0.23 -0.0
158,191 + H281DRAFT_05395 0.33 +0.4
158,191 + H281DRAFT_05395 0.33 -0.3
158,192 - H281DRAFT_05395 0.33 +1.2
158,192 - H281DRAFT_05395 0.33 -0.5
158,351 + H281DRAFT_05395 0.71 +0.6
158,352 - H281DRAFT_05395 0.71 +0.3
158,352 - H281DRAFT_05395 0.71 +1.2
158,373 - H281DRAFT_05395 0.76 +0.1
158,439 - -1.6
158,448 - -0.2
158,549 + -0.2
158,616 - +0.3
158,668 - +0.4
158,686 + -0.3
158,687 - +0.7

Or see this region's nucleotide sequence