Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05302

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05301 and H281DRAFT_05302 are separated by 28 nucleotidesH281DRAFT_05302 and H281DRAFT_05303 are separated by 9 nucleotides H281DRAFT_05301: H281DRAFT_05301 - Isopenicillin N synthase, at 43,543 to 44,517 _05301 H281DRAFT_05302: H281DRAFT_05302 - FAD/FMN-containing dehydrogenase, at 44,546 to 45,979 _05302 H281DRAFT_05303: H281DRAFT_05303 - cholesterol oxidase, at 45,989 to 49,399 _05303 Position (kb) 44 45 46Strain fitness (log2 ratio) -1 0 1at 43.660 kb on + strand, within H281DRAFT_05301at 43.660 kb on + strand, within H281DRAFT_05301at 43.961 kb on - strand, within H281DRAFT_05301at 43.963 kb on + strand, within H281DRAFT_05301at 44.215 kb on - strand, within H281DRAFT_05301at 44.215 kb on - strand, within H281DRAFT_05301at 44.452 kb on + strandat 44.454 kb on + strandat 44.454 kb on + strandat 44.936 kb on - strand, within H281DRAFT_05302at 45.432 kb on - strandat 46.323 kb on - strandat 46.323 kb on - strandat 46.809 kb on - strand, within H281DRAFT_05303at 46.854 kb on + strand, within H281DRAFT_05303

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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43,660 + H281DRAFT_05301 0.12 +1.0
43,660 + H281DRAFT_05301 0.12 +1.0
43,961 - H281DRAFT_05301 0.43 -1.2
43,963 + H281DRAFT_05301 0.43 +0.3
44,215 - H281DRAFT_05301 0.69 -0.3
44,215 - H281DRAFT_05301 0.69 +0.0
44,452 + +0.0
44,454 + -0.9
44,454 + -0.5
44,936 - H281DRAFT_05302 0.27 -1.4
45,432 - +1.0
46,323 - -1.6
46,323 - +0.4
46,809 - H281DRAFT_05303 0.24 +0.0
46,854 + H281DRAFT_05303 0.25 +0.5

Or see this region's nucleotide sequence