Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05261

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05260 and H281DRAFT_05261 are separated by 139 nucleotidesH281DRAFT_05261 and H281DRAFT_05262 are separated by 152 nucleotides H281DRAFT_05260: H281DRAFT_05260 - Uncharacterized membrane protein YccC, at 1,543 to 3,708 _05260 H281DRAFT_05261: H281DRAFT_05261 - hypothetical protein, at 3,848 to 4,060 _05261 H281DRAFT_05262: H281DRAFT_05262 - succinyl-CoA:acetate CoA-transferase, at 4,213 to 5,727 _05262 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 2.947 kb on + strand, within H281DRAFT_05260at 2.947 kb on + strand, within H281DRAFT_05260at 2.947 kb on + strand, within H281DRAFT_05260at 3.443 kb on - strand, within H281DRAFT_05260at 3.716 kb on - strandat 3.802 kb on + strandat 3.803 kb on - strandat 3.803 kb on - strandat 4.047 kb on - strandat 4.058 kb on + strandat 4.061 kb on + strandat 4.062 kb on - strandat 4.252 kb on - strandat 4.288 kb on - strandat 4.288 kb on - strandat 4.641 kb on - strand, within H281DRAFT_05262at 4.863 kb on + strand, within H281DRAFT_05262at 4.890 kb on + strand, within H281DRAFT_05262at 4.890 kb on + strand, within H281DRAFT_05262at 4.926 kb on - strand, within H281DRAFT_05262at 4.974 kb on + strand, within H281DRAFT_05262at 4.975 kb on - strand, within H281DRAFT_05262at 5.010 kb on - strand, within H281DRAFT_05262

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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2,947 + H281DRAFT_05260 0.65 -0.0
2,947 + H281DRAFT_05260 0.65 -1.8
2,947 + H281DRAFT_05260 0.65 +1.6
3,443 - H281DRAFT_05260 0.88 -0.5
3,716 - -0.3
3,802 + -0.7
3,803 - -0.6
3,803 - -0.8
4,047 - -0.5
4,058 + +0.5
4,061 + +0.0
4,062 - +2.3
4,252 - +0.7
4,288 - -0.1
4,288 - +1.1
4,641 - H281DRAFT_05262 0.28 -0.5
4,863 + H281DRAFT_05262 0.43 -0.4
4,890 + H281DRAFT_05262 0.45 -0.9
4,890 + H281DRAFT_05262 0.45 -0.2
4,926 - H281DRAFT_05262 0.47 -0.3
4,974 + H281DRAFT_05262 0.50 +0.6
4,975 - H281DRAFT_05262 0.50 +0.2
5,010 - H281DRAFT_05262 0.53 -0.1

Or see this region's nucleotide sequence