Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05214

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05213 and H281DRAFT_05214 are separated by 34 nucleotidesH281DRAFT_05214 and H281DRAFT_05215 are separated by 119 nucleotides H281DRAFT_05213: H281DRAFT_05213 - gluconate 2-dehydrogenase, at 175,833 to 176,798 _05213 H281DRAFT_05214: H281DRAFT_05214 - transcriptional regulator, LacI family, at 176,833 to 177,945 _05214 H281DRAFT_05215: H281DRAFT_05215 - Uncharacterized membrane protein YhfC, at 178,065 to 178,934 _05215 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1at 176.242 kb on + strand, within H281DRAFT_05213at 176.340 kb on + strand, within H281DRAFT_05213at 176.517 kb on - strand, within H281DRAFT_05213at 176.676 kb on - strand, within H281DRAFT_05213at 177.119 kb on - strand, within H281DRAFT_05214at 177.119 kb on - strandat 177.234 kb on + strand, within H281DRAFT_05214at 178.246 kb on - strand, within H281DRAFT_05215at 178.476 kb on + strand, within H281DRAFT_05215at 178.477 kb on - strand, within H281DRAFT_05215at 178.582 kb on - strand, within H281DRAFT_05215at 178.867 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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176,242 + H281DRAFT_05213 0.42 +0.9
176,340 + H281DRAFT_05213 0.52 -1.0
176,517 - H281DRAFT_05213 0.71 -1.7
176,676 - H281DRAFT_05213 0.87 +0.0
177,119 - H281DRAFT_05214 0.26 -2.4
177,119 - +0.8
177,234 + H281DRAFT_05214 0.36 -1.2
178,246 - H281DRAFT_05215 0.21 +0.6
178,476 + H281DRAFT_05215 0.47 -1.0
178,477 - H281DRAFT_05215 0.47 -0.1
178,582 - H281DRAFT_05215 0.59 -1.2
178,867 + +0.2

Or see this region's nucleotide sequence