Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05162

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05160 and H281DRAFT_05161 overlap by 4 nucleotidesH281DRAFT_05161 and H281DRAFT_05162 are separated by 368 nucleotidesH281DRAFT_05162 and H281DRAFT_05163 are separated by 184 nucleotides H281DRAFT_05160: H281DRAFT_05160 - allantoicase, at 113,631 to 114,644 _05160 H281DRAFT_05161: H281DRAFT_05161 - ureidoglycolate lyase, at 114,641 to 115,153 _05161 H281DRAFT_05162: H281DRAFT_05162 - Uncharacterized membrane protein, at 115,522 to 116,715 _05162 H281DRAFT_05163: H281DRAFT_05163 - 5-hydroxyisourate hydrolase, at 116,900 to 117,253 _05163 Position (kb) 115 116 117Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 114.535 kb on - strand, within H281DRAFT_05160at 115.275 kb on - strandat 115.275 kb on - strandat 115.280 kb on + strandat 115.426 kb on + strandat 115.427 kb on - strandat 115.492 kb on - strandat 115.631 kb on + strandat 115.632 kb on - strandat 115.668 kb on + strand, within H281DRAFT_05162at 115.669 kb on - strand, within H281DRAFT_05162at 115.871 kb on + strand, within H281DRAFT_05162at 115.871 kb on + strand, within H281DRAFT_05162at 115.872 kb on - strand, within H281DRAFT_05162at 115.961 kb on + strand, within H281DRAFT_05162at 115.962 kb on - strand, within H281DRAFT_05162at 115.973 kb on + strand, within H281DRAFT_05162at 115.974 kb on - strand, within H281DRAFT_05162at 115.974 kb on - strand, within H281DRAFT_05162at 116.027 kb on + strand, within H281DRAFT_05162at 116.066 kb on + strand, within H281DRAFT_05162at 116.187 kb on - strand, within H281DRAFT_05162at 116.263 kb on + strand, within H281DRAFT_05162at 116.263 kb on + strand, within H281DRAFT_05162at 116.264 kb on - strand, within H281DRAFT_05162at 116.303 kb on + strand, within H281DRAFT_05162at 116.391 kb on - strand, within H281DRAFT_05162at 116.510 kb on + strand, within H281DRAFT_05162at 116.511 kb on - strand, within H281DRAFT_05162at 116.511 kb on - strand, within H281DRAFT_05162at 116.511 kb on - strand, within H281DRAFT_05162at 116.525 kb on + strand, within H281DRAFT_05162at 116.543 kb on - strand, within H281DRAFT_05162at 116.628 kb on - strandat 117.305 kb on + strandat 117.342 kb on - strandat 117.387 kb on - strandat 117.387 kb on - strandat 117.387 kb on - strandat 117.429 kb on + strandat 117.430 kb on - strandat 117.430 kb on - strandat 117.497 kb on + strandat 117.497 kb on + strandat 117.539 kb on + strandat 117.539 kb on + strandat 117.539 kb on + strandat 117.540 kb on - strandat 117.680 kb on + strandat 117.680 kb on + strandat 117.681 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
114,535 - H281DRAFT_05160 0.89 -2.4
115,275 - -0.1
115,275 - +1.1
115,280 + +0.1
115,426 + -0.1
115,427 - -0.1
115,492 - +1.3
115,631 + -2.0
115,632 - -1.2
115,668 + H281DRAFT_05162 0.12 -1.2
115,669 - H281DRAFT_05162 0.12 -0.4
115,871 + H281DRAFT_05162 0.29 -1.1
115,871 + H281DRAFT_05162 0.29 -2.2
115,872 - H281DRAFT_05162 0.29 -1.4
115,961 + H281DRAFT_05162 0.37 -0.8
115,962 - H281DRAFT_05162 0.37 -0.8
115,973 + H281DRAFT_05162 0.38 -1.1
115,974 - H281DRAFT_05162 0.38 -2.6
115,974 - H281DRAFT_05162 0.38 -1.7
116,027 + H281DRAFT_05162 0.42 -2.5
116,066 + H281DRAFT_05162 0.46 -1.9
116,187 - H281DRAFT_05162 0.56 -3.4
116,263 + H281DRAFT_05162 0.62 -2.7
116,263 + H281DRAFT_05162 0.62 -1.2
116,264 - H281DRAFT_05162 0.62 -0.1
116,303 + H281DRAFT_05162 0.65 -4.4
116,391 - H281DRAFT_05162 0.73 -2.4
116,510 + H281DRAFT_05162 0.83 -3.2
116,511 - H281DRAFT_05162 0.83 -0.2
116,511 - H281DRAFT_05162 0.83 -3.4
116,511 - H281DRAFT_05162 0.83 -2.0
116,525 + H281DRAFT_05162 0.84 -2.3
116,543 - H281DRAFT_05162 0.86 -0.6
116,628 - -1.2
117,305 + -1.7
117,342 - +0.1
117,387 - +0.1
117,387 - -0.6
117,387 - -1.3
117,429 + -0.7
117,430 - +0.2
117,430 - -0.6
117,497 + +1.0
117,497 + +1.7
117,539 + +1.0
117,539 + +2.0
117,539 + +1.3
117,540 - +0.1
117,680 + -1.2
117,680 + +1.0
117,681 - -0.6

Or see this region's nucleotide sequence