Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04753

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04752 and H281DRAFT_04753 are separated by 38 nucleotidesH281DRAFT_04753 and H281DRAFT_04754 are separated by 6 nucleotidesH281DRAFT_04754 and H281DRAFT_04755 are separated by 153 nucleotides H281DRAFT_04752: H281DRAFT_04752 - xanthine dehydrogenase small subunit, at 165,464 to 167,017 _04752 H281DRAFT_04753: H281DRAFT_04753 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 167,056 to 169,419 _04753 H281DRAFT_04754: H281DRAFT_04754 - xanthine dehydrogenase accessory protein XdhC, at 169,426 to 170,025 _04754 H281DRAFT_04755: H281DRAFT_04755 - transcriptional regulator, LysR family, at 170,179 to 171,144 _04755 Position (kb) 167 168 169 170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 166.214 kb on + strand, within H281DRAFT_04752at 166.215 kb on - strand, within H281DRAFT_04752at 166.301 kb on + strand, within H281DRAFT_04752at 166.347 kb on + strand, within H281DRAFT_04752at 166.508 kb on + strand, within H281DRAFT_04752at 166.508 kb on + strand, within H281DRAFT_04752at 166.508 kb on + strand, within H281DRAFT_04752at 166.531 kb on + strand, within H281DRAFT_04752at 166.610 kb on + strand, within H281DRAFT_04752at 166.611 kb on - strand, within H281DRAFT_04752at 166.611 kb on - strand, within H281DRAFT_04752at 166.611 kb on - strand, within H281DRAFT_04752at 166.612 kb on + strand, within H281DRAFT_04752at 166.612 kb on + strand, within H281DRAFT_04752at 166.613 kb on - strand, within H281DRAFT_04752at 166.860 kb on - strand, within H281DRAFT_04752at 167.040 kb on + strandat 167.041 kb on - strandat 167.173 kb on + strandat 167.174 kb on - strandat 167.298 kb on + strand, within H281DRAFT_04753at 167.299 kb on - strand, within H281DRAFT_04753at 167.299 kb on - strand, within H281DRAFT_04753at 167.390 kb on - strand, within H281DRAFT_04753at 167.632 kb on + strand, within H281DRAFT_04753at 167.653 kb on + strand, within H281DRAFT_04753at 167.689 kb on + strand, within H281DRAFT_04753at 167.689 kb on + strand, within H281DRAFT_04753at 167.932 kb on + strand, within H281DRAFT_04753at 167.938 kb on + strand, within H281DRAFT_04753at 167.938 kb on + strand, within H281DRAFT_04753at 167.938 kb on + strand, within H281DRAFT_04753at 167.938 kb on + strand, within H281DRAFT_04753at 167.938 kb on + strand, within H281DRAFT_04753at 167.938 kb on + strand, within H281DRAFT_04753at 167.938 kb on + strand, within H281DRAFT_04753at 167.939 kb on - strand, within H281DRAFT_04753at 167.939 kb on - strand, within H281DRAFT_04753at 168.176 kb on - strand, within H281DRAFT_04753at 168.180 kb on + strand, within H281DRAFT_04753at 168.180 kb on + strand, within H281DRAFT_04753at 168.180 kb on + strand, within H281DRAFT_04753at 168.258 kb on + strand, within H281DRAFT_04753at 168.259 kb on - strand, within H281DRAFT_04753at 168.259 kb on - strand, within H281DRAFT_04753at 168.259 kb on - strand, within H281DRAFT_04753at 168.259 kb on - strand, within H281DRAFT_04753at 168.474 kb on + strand, within H281DRAFT_04753at 168.475 kb on - strand, within H281DRAFT_04753at 168.478 kb on + strand, within H281DRAFT_04753at 168.478 kb on + strand, within H281DRAFT_04753at 168.628 kb on - strand, within H281DRAFT_04753at 168.835 kb on + strand, within H281DRAFT_04753at 168.835 kb on + strand, within H281DRAFT_04753at 168.925 kb on + strand, within H281DRAFT_04753at 168.926 kb on - strand, within H281DRAFT_04753at 168.928 kb on + strand, within H281DRAFT_04753at 168.928 kb on + strand, within H281DRAFT_04753at 168.928 kb on + strand, within H281DRAFT_04753at 168.928 kb on + strand, within H281DRAFT_04753at 168.929 kb on - strand, within H281DRAFT_04753at 168.937 kb on + strand, within H281DRAFT_04753at 169.177 kb on - strand, within H281DRAFT_04753at 169.418 kb on - strandat 169.545 kb on + strand, within H281DRAFT_04754at 169.545 kb on + strand, within H281DRAFT_04754at 169.546 kb on - strand, within H281DRAFT_04754at 169.768 kb on + strand, within H281DRAFT_04754at 169.768 kb on + strand, within H281DRAFT_04754at 169.835 kb on + strand, within H281DRAFT_04754at 169.836 kb on - strand, within H281DRAFT_04754at 170.084 kb on - strandat 170.375 kb on + strand, within H281DRAFT_04755

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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166,214 + H281DRAFT_04752 0.48 -0.8
166,215 - H281DRAFT_04752 0.48 +0.5
166,301 + H281DRAFT_04752 0.54 -1.2
166,347 + H281DRAFT_04752 0.57 +0.1
166,508 + H281DRAFT_04752 0.67 -0.1
166,508 + H281DRAFT_04752 0.67 -1.6
166,508 + H281DRAFT_04752 0.67 -1.0
166,531 + H281DRAFT_04752 0.69 -1.0
166,610 + H281DRAFT_04752 0.74 -0.5
166,611 - H281DRAFT_04752 0.74 -0.1
166,611 - H281DRAFT_04752 0.74 -0.7
166,611 - H281DRAFT_04752 0.74 -1.5
166,612 + H281DRAFT_04752 0.74 +0.1
166,612 + H281DRAFT_04752 0.74 -3.2
166,613 - H281DRAFT_04752 0.74 -0.5
166,860 - H281DRAFT_04752 0.90 -1.4
167,040 + -0.7
167,041 - -1.1
167,173 + -1.6
167,174 - -1.1
167,298 + H281DRAFT_04753 0.10 -2.8
167,299 - H281DRAFT_04753 0.10 -1.7
167,299 - H281DRAFT_04753 0.10 -0.2
167,390 - H281DRAFT_04753 0.14 -1.0
167,632 + H281DRAFT_04753 0.24 +0.1
167,653 + H281DRAFT_04753 0.25 -0.3
167,689 + H281DRAFT_04753 0.27 -0.4
167,689 + H281DRAFT_04753 0.27 -0.6
167,932 + H281DRAFT_04753 0.37 -1.4
167,938 + H281DRAFT_04753 0.37 +1.0
167,938 + H281DRAFT_04753 0.37 -2.7
167,938 + H281DRAFT_04753 0.37 -2.2
167,938 + H281DRAFT_04753 0.37 -1.1
167,938 + H281DRAFT_04753 0.37 -0.3
167,938 + H281DRAFT_04753 0.37 -0.0
167,938 + H281DRAFT_04753 0.37 -1.3
167,939 - H281DRAFT_04753 0.37 +0.1
167,939 - H281DRAFT_04753 0.37 -1.2
168,176 - H281DRAFT_04753 0.47 -0.5
168,180 + H281DRAFT_04753 0.48 -3.8
168,180 + H281DRAFT_04753 0.48 -0.9
168,180 + H281DRAFT_04753 0.48 -0.9
168,258 + H281DRAFT_04753 0.51 +0.3
168,259 - H281DRAFT_04753 0.51 -1.9
168,259 - H281DRAFT_04753 0.51 -3.3
168,259 - H281DRAFT_04753 0.51 -1.2
168,259 - H281DRAFT_04753 0.51 -1.0
168,474 + H281DRAFT_04753 0.60 -1.2
168,475 - H281DRAFT_04753 0.60 -0.5
168,478 + H281DRAFT_04753 0.60 -1.0
168,478 + H281DRAFT_04753 0.60 -2.4
168,628 - H281DRAFT_04753 0.66 -0.1
168,835 + H281DRAFT_04753 0.75 -0.7
168,835 + H281DRAFT_04753 0.75 +0.2
168,925 + H281DRAFT_04753 0.79 -1.4
168,926 - H281DRAFT_04753 0.79 -2.2
168,928 + H281DRAFT_04753 0.79 -0.2
168,928 + H281DRAFT_04753 0.79 -1.5
168,928 + H281DRAFT_04753 0.79 -3.5
168,928 + H281DRAFT_04753 0.79 -1.0
168,929 - H281DRAFT_04753 0.79 -0.2
168,937 + H281DRAFT_04753 0.80 -2.0
169,177 - H281DRAFT_04753 0.90 -2.7
169,418 - -0.8
169,545 + H281DRAFT_04754 0.20 -0.4
169,545 + H281DRAFT_04754 0.20 -1.0
169,546 - H281DRAFT_04754 0.20 -1.0
169,768 + H281DRAFT_04754 0.57 +0.3
169,768 + H281DRAFT_04754 0.57 -0.0
169,835 + H281DRAFT_04754 0.68 -1.8
169,836 - H281DRAFT_04754 0.68 +1.6
170,084 - +0.1
170,375 + H281DRAFT_04755 0.20 -2.7

Or see this region's nucleotide sequence