Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04739 and H281DRAFT_04740 are separated by 322 nucleotides H281DRAFT_04740 and H281DRAFT_04741 are separated by 31 nucleotides
H281DRAFT_04739: H281DRAFT_04739 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 146,880 to 147,713
_04739
H281DRAFT_04740: H281DRAFT_04740 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 148,036 to 149,400
_04740
H281DRAFT_04741: H281DRAFT_04741 - homogentisate 1,2-dioxygenase, at 149,432 to 150,778
_04741
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 147.152 kb on - strand, within H281DRAFT_04739 at 147.161 kb on - strand, within H281DRAFT_04739 at 147.191 kb on + strand, within H281DRAFT_04739 at 147.226 kb on - strand, within H281DRAFT_04739 at 147.287 kb on - strand, within H281DRAFT_04739 at 147.315 kb on + strand, within H281DRAFT_04739 at 147.322 kb on - strand, within H281DRAFT_04739 at 147.327 kb on + strand, within H281DRAFT_04739 at 147.441 kb on - strand, within H281DRAFT_04739 at 147.715 kb on + strand at 147.728 kb on - strand at 147.733 kb on - strand at 147.733 kb on - strand at 147.790 kb on + strand at 147.791 kb on - strand at 147.791 kb on - strand at 147.791 kb on - strand at 147.893 kb on + strand at 147.932 kb on + strand at 148.016 kb on + strand at 148.016 kb on + strand at 148.016 kb on + strand at 148.065 kb on + strand at 148.186 kb on + strand, within H281DRAFT_04740 at 148.187 kb on - strand, within H281DRAFT_04740 at 148.187 kb on - strand, within H281DRAFT_04740 at 148.187 kb on - strand, within H281DRAFT_04740 at 148.460 kb on + strand, within H281DRAFT_04740 at 148.673 kb on + strand, within H281DRAFT_04740 at 148.673 kb on + strand, within H281DRAFT_04740 at 148.674 kb on - strand, within H281DRAFT_04740 at 148.870 kb on + strand, within H281DRAFT_04740 at 149.100 kb on - strand, within H281DRAFT_04740 at 149.437 kb on + strand at 149.580 kb on - strand, within H281DRAFT_04741 at 149.655 kb on - strand at 149.681 kb on - strand, within H281DRAFT_04741 at 149.907 kb on - strand, within H281DRAFT_04741 at 149.907 kb on - strand, within H281DRAFT_04741 at 150.167 kb on + strand, within H281DRAFT_04741 at 150.275 kb on + strand, within H281DRAFT_04741 at 150.276 kb on - strand, within H281DRAFT_04741 at 150.285 kb on - strand, within H281DRAFT_04741 at 150.287 kb on - strand, within H281DRAFT_04741 at 150.290 kb on + strand, within H281DRAFT_04741 at 150.291 kb on - strand, within H281DRAFT_04741 at 150.325 kb on + strand, within H281DRAFT_04741
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 147,152 - H281DRAFT_04739 0.33 -1.3 147,161 - H281DRAFT_04739 0.34 -1.4 147,191 + H281DRAFT_04739 0.37 +0.8 147,226 - H281DRAFT_04739 0.41 +0.3 147,287 - H281DRAFT_04739 0.49 -0.6 147,315 + H281DRAFT_04739 0.52 -0.1 147,322 - H281DRAFT_04739 0.53 -1.4 147,327 + H281DRAFT_04739 0.54 +0.1 147,441 - H281DRAFT_04739 0.67 +0.8 147,715 + -0.1 147,728 - +0.1 147,733 - +1.1 147,733 - +1.8 147,790 + +0.7 147,791 - +1.6 147,791 - +0.5 147,791 - +1.1 147,893 + -1.0 147,932 + +0.3 148,016 + +0.1 148,016 + -1.4 148,016 + -3.6 148,065 + -0.6 148,186 + H281DRAFT_04740 0.11 -0.3 148,187 - H281DRAFT_04740 0.11 +0.1 148,187 - H281DRAFT_04740 0.11 +0.6 148,187 - H281DRAFT_04740 0.11 -0.2 148,460 + H281DRAFT_04740 0.31 -0.9 148,673 + H281DRAFT_04740 0.47 +1.0 148,673 + H281DRAFT_04740 0.47 +0.4 148,674 - H281DRAFT_04740 0.47 +1.2 148,870 + H281DRAFT_04740 0.61 -1.0 149,100 - H281DRAFT_04740 0.78 +0.1 149,437 + -0.2 149,580 - H281DRAFT_04741 0.11 -0.1 149,655 - +2.6 149,681 - H281DRAFT_04741 0.18 +0.2 149,907 - H281DRAFT_04741 0.35 -0.6 149,907 - H281DRAFT_04741 0.35 -0.5 150,167 + H281DRAFT_04741 0.55 +1.0 150,275 + H281DRAFT_04741 0.63 -0.4 150,276 - H281DRAFT_04741 0.63 +1.0 150,285 - H281DRAFT_04741 0.63 +0.3 150,287 - H281DRAFT_04741 0.63 +0.1 150,290 + H281DRAFT_04741 0.64 +0.6 150,291 - H281DRAFT_04741 0.64 +0.8 150,325 + H281DRAFT_04741 0.66 -1.6
Or see this region's nucleotide sequence