Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04726 and H281DRAFT_04727 are separated by 6 nucleotides H281DRAFT_04727 and H281DRAFT_04728 are separated by 203 nucleotides H281DRAFT_04728 and H281DRAFT_04729 overlap by 4 nucleotides
H281DRAFT_04726: H281DRAFT_04726 - serine hydroxymethyltransferase, at 137,136 to 138,383
_04726
H281DRAFT_04727: H281DRAFT_04727 - transcriptional repressor NrdR, at 138,390 to 138,872
_04727
H281DRAFT_04728: H281DRAFT_04728 - type IV fimbrial biogenesis protein FimT, at 139,076 to 139,636
_04728
H281DRAFT_04729: H281DRAFT_04729 - Tfp pilus assembly protein PilV, at 139,633 to 140,091
_04729
Position (kb)
138
139 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 138.510 kb on + strand, within H281DRAFT_04727 at 138.511 kb on - strand, within H281DRAFT_04727 at 138.511 kb on - strand, within H281DRAFT_04727 at 138.511 kb on - strand, within H281DRAFT_04727 at 138.725 kb on - strand, within H281DRAFT_04727 at 138.759 kb on + strand, within H281DRAFT_04727 at 138.902 kb on + strand at 138.903 kb on - strand at 138.983 kb on - strand at 139.039 kb on - strand at 139.039 kb on - strand at 139.117 kb on + strand at 139.118 kb on - strand at 139.237 kb on - strand, within H281DRAFT_04728 at 139.294 kb on - strand, within H281DRAFT_04728 at 139.380 kb on + strand, within H281DRAFT_04728 at 139.405 kb on + strand, within H281DRAFT_04728 at 139.406 kb on - strand, within H281DRAFT_04728 at 139.558 kb on + strand, within H281DRAFT_04728 at 139.559 kb on - strand, within H281DRAFT_04728
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 138,510 + H281DRAFT_04727 0.25 +0.2 138,511 - H281DRAFT_04727 0.25 +0.2 138,511 - H281DRAFT_04727 0.25 -2.1 138,511 - H281DRAFT_04727 0.25 -1.1 138,725 - H281DRAFT_04727 0.69 -2.4 138,759 + H281DRAFT_04727 0.76 -1.8 138,902 + -0.5 138,903 - +1.1 138,983 - -0.2 139,039 - -0.3 139,039 - -1.0 139,117 + +0.0 139,118 - +0.6 139,237 - H281DRAFT_04728 0.29 +0.3 139,294 - H281DRAFT_04728 0.39 -0.4 139,380 + H281DRAFT_04728 0.54 +0.2 139,405 + H281DRAFT_04728 0.59 +0.3 139,406 - H281DRAFT_04728 0.59 +3.0 139,558 + H281DRAFT_04728 0.86 +0.4 139,559 - H281DRAFT_04728 0.86 -0.8
Or see this region's nucleotide sequence