Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04610

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04607 and H281DRAFT_04608 are separated by 37 nucleotidesH281DRAFT_04608 and H281DRAFT_04609 are separated by 38 nucleotidesH281DRAFT_04609 and H281DRAFT_04610 are separated by 494 nucleotidesH281DRAFT_04610 and H281DRAFT_04611 are separated by 34 nucleotidesH281DRAFT_04611 and H281DRAFT_04612 are separated by 78 nucleotides H281DRAFT_04607: H281DRAFT_04607 - hypothetical protein, at 889 to 1,260 _04607 H281DRAFT_04608: H281DRAFT_04608 - hypothetical protein, at 1,298 to 1,474 _04608 H281DRAFT_04609: H281DRAFT_04609 - hypothetical protein, at 1,513 to 1,731 _04609 H281DRAFT_04610: H281DRAFT_04610 - Fe-S oxidoreductase, at 2,226 to 6,320 _04610 H281DRAFT_04611: H281DRAFT_04611 - Diadenosine tetraphosphate (Ap4A) hydrolase, at 6,355 to 6,783 _04611 H281DRAFT_04612: H281DRAFT_04612 - DUF971 family protein, at 6,862 to 7,275 _04612 Position (kb) 2 3 4 5 6 7Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 1.699 kb on - strand, within H281DRAFT_04609at 1.844 kb on + strandat 2.078 kb on + strandat 2.078 kb on + strandat 2.079 kb on - strandat 2.311 kb on - strandat 2.316 kb on + strandat 2.316 kb on + strandat 2.317 kb on - strandat 2.317 kb on - strandat 2.356 kb on + strandat 2.431 kb on - strandat 2.431 kb on - strandat 2.473 kb on - strandat 2.473 kb on - strandat 2.685 kb on + strand, within H281DRAFT_04610at 2.685 kb on + strand, within H281DRAFT_04610at 2.685 kb on + strand, within H281DRAFT_04610at 2.686 kb on - strand, within H281DRAFT_04610at 2.686 kb on - strand, within H281DRAFT_04610at 2.686 kb on - strand, within H281DRAFT_04610at 3.356 kb on + strand, within H281DRAFT_04610at 3.392 kb on + strand, within H281DRAFT_04610at 3.515 kb on + strand, within H281DRAFT_04610at 3.588 kb on + strand, within H281DRAFT_04610at 3.588 kb on + strand, within H281DRAFT_04610at 3.588 kb on + strand, within H281DRAFT_04610at 3.589 kb on - strand, within H281DRAFT_04610at 3.589 kb on - strand, within H281DRAFT_04610at 3.589 kb on - strand, within H281DRAFT_04610at 3.655 kb on - strand, within H281DRAFT_04610at 3.959 kb on + strand, within H281DRAFT_04610at 3.960 kb on - strand, within H281DRAFT_04610at 4.191 kb on + strand, within H281DRAFT_04610at 4.191 kb on + strand, within H281DRAFT_04610at 4.191 kb on + strand, within H281DRAFT_04610at 4.209 kb on + strand, within H281DRAFT_04610at 4.210 kb on - strand, within H281DRAFT_04610at 4.485 kb on + strand, within H281DRAFT_04610at 4.485 kb on + strand, within H281DRAFT_04610at 4.486 kb on - strand, within H281DRAFT_04610at 4.486 kb on - strand, within H281DRAFT_04610at 4.488 kb on - strand, within H281DRAFT_04610at 4.583 kb on + strand, within H281DRAFT_04610at 4.635 kb on - strand, within H281DRAFT_04610at 4.635 kb on - strand, within H281DRAFT_04610at 4.707 kb on + strand, within H281DRAFT_04610at 4.707 kb on + strand, within H281DRAFT_04610at 4.857 kb on + strand, within H281DRAFT_04610at 4.912 kb on - strand, within H281DRAFT_04610at 5.156 kb on + strand, within H281DRAFT_04610at 5.156 kb on + strand, within H281DRAFT_04610at 5.157 kb on - strand, within H281DRAFT_04610at 5.422 kb on - strand, within H281DRAFT_04610at 5.422 kb on - strand, within H281DRAFT_04610at 5.422 kb on - strand, within H281DRAFT_04610at 5.615 kb on - strand, within H281DRAFT_04610at 5.615 kb on - strand, within H281DRAFT_04610at 5.631 kb on + strand, within H281DRAFT_04610at 5.631 kb on + strand, within H281DRAFT_04610at 5.631 kb on + strand, within H281DRAFT_04610at 5.632 kb on - strand, within H281DRAFT_04610at 5.632 kb on - strand, within H281DRAFT_04610at 5.673 kb on + strand, within H281DRAFT_04610at 5.674 kb on - strand, within H281DRAFT_04610at 5.790 kb on + strand, within H281DRAFT_04610at 5.790 kb on + strand, within H281DRAFT_04610at 5.790 kb on + strand, within H281DRAFT_04610at 5.790 kb on + strand, within H281DRAFT_04610at 5.791 kb on - strand, within H281DRAFT_04610at 5.791 kb on - strand, within H281DRAFT_04610at 5.791 kb on - strand, within H281DRAFT_04610at 5.796 kb on + strand, within H281DRAFT_04610at 5.797 kb on - strand, within H281DRAFT_04610at 5.797 kb on - strand, within H281DRAFT_04610at 5.797 kb on - strand, within H281DRAFT_04610at 5.797 kb on - strand, within H281DRAFT_04610at 5.797 kb on - strand, within H281DRAFT_04610at 5.881 kb on - strand, within H281DRAFT_04610at 6.190 kb on - strandat 6.190 kb on - strandat 6.219 kb on + strandat 6.219 kb on + strandat 6.220 kb on - strandat 6.220 kb on - strandat 6.220 kb on - strandat 6.273 kb on + strandat 6.273 kb on + strandat 6.274 kb on - strandat 6.318 kb on + strandat 6.443 kb on - strand, within H281DRAFT_04611at 6.561 kb on + strand, within H281DRAFT_04611at 6.561 kb on + strand, within H281DRAFT_04611at 6.849 kb on + strandat 6.850 kb on - strandat 6.940 kb on + strand, within H281DRAFT_04612at 6.940 kb on + strand, within H281DRAFT_04612at 6.958 kb on + strand, within H281DRAFT_04612at 7.090 kb on + strand, within H281DRAFT_04612at 7.091 kb on - strand, within H281DRAFT_04612at 7.135 kb on + strand, within H281DRAFT_04612at 7.135 kb on + strandat 7.135 kb on + strand, within H281DRAFT_04612at 7.135 kb on + strand, within H281DRAFT_04612at 7.135 kb on + strand, within H281DRAFT_04612at 7.136 kb on - strand, within H281DRAFT_04612at 7.136 kb on - strand, within H281DRAFT_04612at 7.153 kb on + strand, within H281DRAFT_04612at 7.153 kb on + strand, within H281DRAFT_04612at 7.192 kb on + strand, within H281DRAFT_04612at 7.192 kb on + strand, within H281DRAFT_04612at 7.276 kb on + strandat 7.277 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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1,699 - H281DRAFT_04609 0.85 -0.1
1,844 + -0.5
2,078 + +0.5
2,078 + -0.4
2,079 - -3.5
2,311 - -4.6
2,316 + -4.1
2,316 + -5.0
2,317 - -1.8
2,317 - -2.6
2,356 + -2.9
2,431 - -4.4
2,431 - -1.8
2,473 - -2.4
2,473 - -1.5
2,685 + H281DRAFT_04610 0.11 -5.4
2,685 + H281DRAFT_04610 0.11 -3.7
2,685 + H281DRAFT_04610 0.11 -3.0
2,686 - H281DRAFT_04610 0.11 -3.5
2,686 - H281DRAFT_04610 0.11 -3.2
2,686 - H281DRAFT_04610 0.11 -4.2
3,356 + H281DRAFT_04610 0.28 -3.2
3,392 + H281DRAFT_04610 0.28 -1.8
3,515 + H281DRAFT_04610 0.31 -5.3
3,588 + H281DRAFT_04610 0.33 -2.9
3,588 + H281DRAFT_04610 0.33 -4.5
3,588 + H281DRAFT_04610 0.33 -4.3
3,589 - H281DRAFT_04610 0.33 -4.3
3,589 - H281DRAFT_04610 0.33 -2.8
3,589 - H281DRAFT_04610 0.33 -0.8
3,655 - H281DRAFT_04610 0.35 -4.3
3,959 + H281DRAFT_04610 0.42 -6.6
3,960 - H281DRAFT_04610 0.42 -4.3
4,191 + H281DRAFT_04610 0.48 -4.1
4,191 + H281DRAFT_04610 0.48 -3.1
4,191 + H281DRAFT_04610 0.48 -4.1
4,209 + H281DRAFT_04610 0.48 -0.1
4,210 - H281DRAFT_04610 0.48 -3.6
4,485 + H281DRAFT_04610 0.55 -2.2
4,485 + H281DRAFT_04610 0.55 -3.5
4,486 - H281DRAFT_04610 0.55 +0.4
4,486 - H281DRAFT_04610 0.55 -4.9
4,488 - H281DRAFT_04610 0.55 -4.2
4,583 + H281DRAFT_04610 0.58 -3.3
4,635 - H281DRAFT_04610 0.59 -4.5
4,635 - H281DRAFT_04610 0.59 -2.7
4,707 + H281DRAFT_04610 0.61 -4.1
4,707 + H281DRAFT_04610 0.61 -2.1
4,857 + H281DRAFT_04610 0.64 -1.0
4,912 - H281DRAFT_04610 0.66 -3.7
5,156 + H281DRAFT_04610 0.72 -3.6
5,156 + H281DRAFT_04610 0.72 -5.4
5,157 - H281DRAFT_04610 0.72 -3.1
5,422 - H281DRAFT_04610 0.78 -2.3
5,422 - H281DRAFT_04610 0.78 -5.1
5,422 - H281DRAFT_04610 0.78 -1.3
5,615 - H281DRAFT_04610 0.83 -5.1
5,615 - H281DRAFT_04610 0.83 -2.1
5,631 + H281DRAFT_04610 0.83 -3.1
5,631 + H281DRAFT_04610 0.83 -0.7
5,631 + H281DRAFT_04610 0.83 -3.9
5,632 - H281DRAFT_04610 0.83 -3.5
5,632 - H281DRAFT_04610 0.83 -1.0
5,673 + H281DRAFT_04610 0.84 -4.1
5,674 - H281DRAFT_04610 0.84 -4.7
5,790 + H281DRAFT_04610 0.87 -4.2
5,790 + H281DRAFT_04610 0.87 -2.7
5,790 + H281DRAFT_04610 0.87 -4.3
5,790 + H281DRAFT_04610 0.87 -4.1
5,791 - H281DRAFT_04610 0.87 -5.2
5,791 - H281DRAFT_04610 0.87 -3.8
5,791 - H281DRAFT_04610 0.87 -3.4
5,796 + H281DRAFT_04610 0.87 -4.6
5,797 - H281DRAFT_04610 0.87 -2.9
5,797 - H281DRAFT_04610 0.87 -2.5
5,797 - H281DRAFT_04610 0.87 -4.4
5,797 - H281DRAFT_04610 0.87 -3.5
5,797 - H281DRAFT_04610 0.87 -4.5
5,881 - H281DRAFT_04610 0.89 -4.6
6,190 - -3.1
6,190 - -4.8
6,219 + -4.9
6,219 + -1.3
6,220 - -4.0
6,220 - -3.1
6,220 - -3.2
6,273 + -4.9
6,273 + -4.1
6,274 - -3.5
6,318 + +0.2
6,443 - H281DRAFT_04611 0.21 +0.8
6,561 + H281DRAFT_04611 0.48 +0.1
6,561 + H281DRAFT_04611 0.48 -0.3
6,849 + +0.1
6,850 - -1.3
6,940 + H281DRAFT_04612 0.19 -0.5
6,940 + H281DRAFT_04612 0.19 +0.1
6,958 + H281DRAFT_04612 0.23 +0.8
7,090 + H281DRAFT_04612 0.55 +0.3
7,091 - H281DRAFT_04612 0.55 +0.7
7,135 + H281DRAFT_04612 0.66 -0.2
7,135 + +1.0
7,135 + H281DRAFT_04612 0.66 -1.0
7,135 + H281DRAFT_04612 0.66 +0.7
7,135 + H281DRAFT_04612 0.66 -0.4
7,136 - H281DRAFT_04612 0.66 -0.2
7,136 - H281DRAFT_04612 0.66 -0.4
7,153 + H281DRAFT_04612 0.70 +0.1
7,153 + H281DRAFT_04612 0.70 -0.0
7,192 + H281DRAFT_04612 0.80 -0.7
7,192 + H281DRAFT_04612 0.80 -2.9
7,276 + -0.4
7,277 - +3.0

Or see this region's nucleotide sequence