Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04460

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04459 and H281DRAFT_04460 are separated by 63 nucleotidesH281DRAFT_04460 and H281DRAFT_04461 are separated by 13 nucleotides H281DRAFT_04459: H281DRAFT_04459 - 5-dehydro-2-deoxygluconokinase, at 181,890 to 183,938 _04459 H281DRAFT_04460: H281DRAFT_04460 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 184,002 to 184,841 _04460 H281DRAFT_04461: H281DRAFT_04461 - monosaccharide ABC transporter membrane protein, CUT2 family, at 184,855 to 186,027 _04461 Position (kb) 184 185Strain fitness (log2 ratio) -1 0 1at 183.627 kb on + strand, within H281DRAFT_04459at 184.532 kb on - strand, within H281DRAFT_04460at 184.883 kb on + strandat 184.928 kb on - strandat 185.580 kb on - strand, within H281DRAFT_04461

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
183,627 + H281DRAFT_04459 0.85 -0.4
184,532 - H281DRAFT_04460 0.63 +1.2
184,883 + +0.3
184,928 - -0.6
185,580 - H281DRAFT_04461 0.62 +0.1

Or see this region's nucleotide sequence