Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04392

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04391 and H281DRAFT_04392 are separated by 255 nucleotidesH281DRAFT_04392 and H281DRAFT_04393 are separated by 151 nucleotidesH281DRAFT_04393 and H281DRAFT_04394 are separated by 73 nucleotides H281DRAFT_04391: H281DRAFT_04391 - Glycosyltransferase involved in cell wall bisynthesis, at 106,149 to 107,213 _04391 H281DRAFT_04392: H281DRAFT_04392 - hypothetical protein, at 107,469 to 108,323 _04392 H281DRAFT_04393: H281DRAFT_04393 - putative membrane protein, at 108,475 to 108,939 _04393 H281DRAFT_04394: H281DRAFT_04394 - ATP-binding cassette, subfamily B, at 109,013 to 110,890 _04394 Position (kb) 107 108 109Strain fitness (log2 ratio) -2 -1 0 1 2 3at 106.614 kb on + strand, within H281DRAFT_04391at 106.615 kb on - strandat 106.668 kb on + strand, within H281DRAFT_04391at 106.669 kb on - strand, within H281DRAFT_04391at 106.669 kb on - strand, within H281DRAFT_04391at 106.788 kb on + strand, within H281DRAFT_04391at 106.789 kb on - strand, within H281DRAFT_04391at 106.789 kb on - strand, within H281DRAFT_04391at 106.791 kb on + strand, within H281DRAFT_04391at 106.836 kb on + strand, within H281DRAFT_04391at 106.836 kb on + strand, within H281DRAFT_04391at 106.836 kb on + strand, within H281DRAFT_04391at 106.836 kb on + strand, within H281DRAFT_04391at 106.836 kb on + strand, within H281DRAFT_04391at 106.837 kb on - strand, within H281DRAFT_04391at 106.837 kb on - strand, within H281DRAFT_04391at 107.072 kb on + strand, within H281DRAFT_04391at 107.072 kb on + strand, within H281DRAFT_04391at 107.073 kb on - strand, within H281DRAFT_04391at 107.142 kb on + strandat 107.142 kb on + strandat 107.151 kb on - strandat 107.151 kb on - strandat 107.154 kb on + strandat 107.155 kb on - strandat 107.230 kb on - strandat 107.271 kb on + strandat 107.272 kb on - strandat 107.272 kb on - strandat 107.368 kb on + strandat 107.405 kb on + strandat 107.405 kb on + strandat 107.405 kb on + strandat 107.405 kb on + strandat 107.406 kb on - strandat 107.406 kb on - strandat 107.406 kb on - strandat 107.414 kb on + strandat 107.414 kb on + strandat 107.414 kb on + strandat 107.415 kb on - strandat 107.415 kb on - strandat 107.417 kb on - strandat 107.417 kb on - strandat 107.531 kb on - strandat 107.531 kb on - strandat 108.374 kb on + strandat 108.375 kb on - strandat 108.375 kb on - strandat 108.375 kb on - strandat 108.375 kb on - strandat 108.518 kb on - strandat 108.609 kb on + strand, within H281DRAFT_04393at 108.609 kb on + strand, within H281DRAFT_04393at 108.610 kb on - strand, within H281DRAFT_04393at 108.673 kb on + strand, within H281DRAFT_04393at 108.674 kb on - strand, within H281DRAFT_04393at 108.692 kb on - strand, within H281DRAFT_04393at 108.694 kb on + strand, within H281DRAFT_04393at 108.695 kb on - strand, within H281DRAFT_04393at 108.695 kb on - strand, within H281DRAFT_04393at 108.740 kb on + strand, within H281DRAFT_04393at 108.938 kb on - strandat 108.938 kb on - strandat 108.962 kb on + strandat 108.962 kb on + strandat 108.962 kb on + strandat 108.971 kb on + strandat 108.971 kb on + strandat 108.981 kb on + strandat 108.982 kb on - strandat 108.982 kb on - strandat 109.140 kb on + strandat 109.190 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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106,614 + H281DRAFT_04391 0.44 +2.7
106,615 - +2.9
106,668 + H281DRAFT_04391 0.49 +3.4
106,669 - H281DRAFT_04391 0.49 +1.7
106,669 - H281DRAFT_04391 0.49 +2.2
106,788 + H281DRAFT_04391 0.60 +2.0
106,789 - H281DRAFT_04391 0.60 +3.0
106,789 - H281DRAFT_04391 0.60 +1.5
106,791 + H281DRAFT_04391 0.60 +2.5
106,836 + H281DRAFT_04391 0.65 +2.0
106,836 + H281DRAFT_04391 0.65 +2.3
106,836 + H281DRAFT_04391 0.65 +1.9
106,836 + H281DRAFT_04391 0.65 +2.8
106,836 + H281DRAFT_04391 0.65 +3.7
106,837 - H281DRAFT_04391 0.65 +2.4
106,837 - H281DRAFT_04391 0.65 +2.2
107,072 + H281DRAFT_04391 0.87 +1.7
107,072 + H281DRAFT_04391 0.87 +1.9
107,073 - H281DRAFT_04391 0.87 +1.9
107,142 + +2.4
107,142 + +2.0
107,151 - +2.4
107,151 - +2.0
107,154 + +1.7
107,155 - +2.9
107,230 - +1.3
107,271 + +0.2
107,272 - -0.2
107,272 - +0.4
107,368 + -0.2
107,405 + -0.6
107,405 + -0.2
107,405 + -1.4
107,405 + -0.6
107,406 - -0.3
107,406 - +0.6
107,406 - -0.7
107,414 + +0.3
107,414 + -0.5
107,414 + +0.5
107,415 - -1.4
107,415 - +0.3
107,417 - -0.4
107,417 - +0.7
107,531 - +0.1
107,531 - +0.4
108,374 + +0.2
108,375 - +0.0
108,375 - -0.2
108,375 - -0.3
108,375 - +0.2
108,518 - -0.3
108,609 + H281DRAFT_04393 0.29 -0.3
108,609 + H281DRAFT_04393 0.29 +1.2
108,610 - H281DRAFT_04393 0.29 +0.2
108,673 + H281DRAFT_04393 0.43 -2.4
108,674 - H281DRAFT_04393 0.43 -1.3
108,692 - H281DRAFT_04393 0.47 +1.5
108,694 + H281DRAFT_04393 0.47 -0.6
108,695 - H281DRAFT_04393 0.47 +0.7
108,695 - H281DRAFT_04393 0.47 +0.6
108,740 + H281DRAFT_04393 0.57 -2.1
108,938 - +0.8
108,938 - +0.4
108,962 + -0.2
108,962 + -1.2
108,962 + +0.7
108,971 + +0.3
108,971 + +0.2
108,981 + -0.5
108,982 - +0.2
108,982 - -0.7
109,140 + +0.9
109,190 + +1.3

Or see this region's nucleotide sequence