Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04316 and H281DRAFT_04317 are separated by 483 nucleotides H281DRAFT_04317 and H281DRAFT_04318 are separated by 323 nucleotides H281DRAFT_04318 and H281DRAFT_04319 are separated by 311 nucleotides
H281DRAFT_04316: H281DRAFT_04316 - bile acid:Na+ symporter, BASS family, at 33,840 to 34,799
_04316
H281DRAFT_04317: H281DRAFT_04317 - multidrug resistance protein, MATE family, at 35,283 to 36,695
_04317
H281DRAFT_04318: H281DRAFT_04318 - ribosome-associated protein, at 37,019 to 37,237
_04318
H281DRAFT_04319: H281DRAFT_04319 - hypothetical protein, at 37,549 to 38,013
_04319
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 34.370 kb on - strand, within H281DRAFT_04316 at 34.379 kb on + strand, within H281DRAFT_04316 at 34.380 kb on - strand, within H281DRAFT_04316 at 34.380 kb on - strand, within H281DRAFT_04316 at 34.462 kb on + strand, within H281DRAFT_04316 at 34.463 kb on - strand, within H281DRAFT_04316 at 34.463 kb on - strand, within H281DRAFT_04316 at 34.585 kb on + strand, within H281DRAFT_04316 at 34.586 kb on - strand, within H281DRAFT_04316 at 34.739 kb on - strand at 34.817 kb on + strand at 34.817 kb on + strand at 34.817 kb on + strand at 34.825 kb on - strand at 34.825 kb on - strand at 34.826 kb on + strand at 34.941 kb on + strand at 34.942 kb on - strand at 35.123 kb on + strand at 35.337 kb on + strand at 35.338 kb on - strand at 35.338 kb on - strand at 35.338 kb on - strand at 35.338 kb on - strand at 35.404 kb on - strand at 35.404 kb on - strand at 35.441 kb on + strand, within H281DRAFT_04317 at 35.441 kb on + strand, within H281DRAFT_04317 at 35.442 kb on - strand, within H281DRAFT_04317 at 35.442 kb on - strand, within H281DRAFT_04317 at 35.442 kb on - strand, within H281DRAFT_04317 at 35.442 kb on - strand, within H281DRAFT_04317 at 35.442 kb on - strand, within H281DRAFT_04317 at 35.496 kb on + strand, within H281DRAFT_04317 at 35.496 kb on + strand, within H281DRAFT_04317 at 35.497 kb on - strand, within H281DRAFT_04317 at 35.600 kb on + strand, within H281DRAFT_04317 at 35.638 kb on + strand, within H281DRAFT_04317 at 35.638 kb on + strand, within H281DRAFT_04317 at 35.638 kb on + strand, within H281DRAFT_04317 at 35.923 kb on + strand, within H281DRAFT_04317 at 35.924 kb on - strand, within H281DRAFT_04317 at 36.134 kb on - strand, within H281DRAFT_04317 at 36.134 kb on - strand, within H281DRAFT_04317 at 36.134 kb on - strand, within H281DRAFT_04317 at 36.397 kb on + strand, within H281DRAFT_04317 at 36.398 kb on - strand, within H281DRAFT_04317 at 36.398 kb on - strand, within H281DRAFT_04317 at 36.787 kb on - strand at 36.834 kb on + strand at 36.835 kb on - strand at 36.835 kb on - strand at 36.928 kb on + strand at 36.928 kb on + strand at 36.929 kb on - strand at 37.058 kb on + strand, within H281DRAFT_04318 at 37.058 kb on + strand, within H281DRAFT_04318 at 37.059 kb on - strand, within H281DRAFT_04318 at 37.203 kb on + strand, within H281DRAFT_04318 at 37.272 kb on + strand at 37.273 kb on - strand at 37.273 kb on - strand at 37.451 kb on + strand at 37.452 kb on - strand at 37.533 kb on + strand at 37.533 kb on + strand at 37.533 kb on + strand at 37.534 kb on - strand at 37.534 kb on - strand at 37.563 kb on + strand at 37.563 kb on + strand at 37.563 kb on + strand at 37.564 kb on - strand at 37.564 kb on - strand at 37.564 kb on - strand at 37.656 kb on + strand, within H281DRAFT_04319 at 37.657 kb on - strand, within H281DRAFT_04319 at 37.664 kb on + strand, within H281DRAFT_04319 at 37.664 kb on + strand, within H281DRAFT_04319 at 37.664 kb on + strand, within H281DRAFT_04319 at 37.665 kb on - strand, within H281DRAFT_04319 at 37.665 kb on - strand, within H281DRAFT_04319 at 37.665 kb on - strand, within H281DRAFT_04319 at 37.665 kb on - strand, within H281DRAFT_04319
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 34,370 - H281DRAFT_04316 0.55 -0.1 34,379 + H281DRAFT_04316 0.56 +1.3 34,380 - H281DRAFT_04316 0.56 +0.0 34,380 - H281DRAFT_04316 0.56 -2.8 34,462 + H281DRAFT_04316 0.65 +0.2 34,463 - H281DRAFT_04316 0.65 +0.0 34,463 - H281DRAFT_04316 0.65 +0.6 34,585 + H281DRAFT_04316 0.78 +0.7 34,586 - H281DRAFT_04316 0.78 +0.7 34,739 - +1.5 34,817 + -0.5 34,817 + -0.1 34,817 + -2.6 34,825 - +0.6 34,825 - -0.3 34,826 + +0.4 34,941 + -0.7 34,942 - -0.4 35,123 + +0.4 35,337 + +0.2 35,338 - +0.3 35,338 - -1.1 35,338 - +1.5 35,338 - +0.2 35,404 - +0.2 35,404 - -0.5 35,441 + H281DRAFT_04317 0.11 +0.5 35,441 + H281DRAFT_04317 0.11 +0.2 35,442 - H281DRAFT_04317 0.11 -0.1 35,442 - H281DRAFT_04317 0.11 +0.0 35,442 - H281DRAFT_04317 0.11 +0.7 35,442 - H281DRAFT_04317 0.11 -0.4 35,442 - H281DRAFT_04317 0.11 +0.9 35,496 + H281DRAFT_04317 0.15 +0.4 35,496 + H281DRAFT_04317 0.15 -0.8 35,497 - H281DRAFT_04317 0.15 -0.9 35,600 + H281DRAFT_04317 0.22 -2.2 35,638 + H281DRAFT_04317 0.25 -0.4 35,638 + H281DRAFT_04317 0.25 -0.1 35,638 + H281DRAFT_04317 0.25 -0.0 35,923 + H281DRAFT_04317 0.45 +0.3 35,924 - H281DRAFT_04317 0.45 +0.2 36,134 - H281DRAFT_04317 0.60 +0.0 36,134 - H281DRAFT_04317 0.60 -0.2 36,134 - H281DRAFT_04317 0.60 -0.2 36,397 + H281DRAFT_04317 0.79 -0.8 36,398 - H281DRAFT_04317 0.79 +0.4 36,398 - H281DRAFT_04317 0.79 -1.0 36,787 - +0.6 36,834 + -0.2 36,835 - -1.0 36,835 - -1.4 36,928 + +0.6 36,928 + +0.5 36,929 - -0.6 37,058 + H281DRAFT_04318 0.18 -0.1 37,058 + H281DRAFT_04318 0.18 +0.2 37,059 - H281DRAFT_04318 0.18 +0.2 37,203 + H281DRAFT_04318 0.84 +1.1 37,272 + -0.5 37,273 - +3.5 37,273 - -0.3 37,451 + +1.3 37,452 - -0.3 37,533 + +0.3 37,533 + -0.5 37,533 + -0.5 37,534 - +0.2 37,534 - -0.6 37,563 + +0.3 37,563 + +3.3 37,563 + +0.6 37,564 - -0.2 37,564 - -0.0 37,564 - -0.4 37,656 + H281DRAFT_04319 0.23 +0.2 37,657 - H281DRAFT_04319 0.23 -0.1 37,664 + H281DRAFT_04319 0.25 +0.1 37,664 + H281DRAFT_04319 0.25 -0.2 37,664 + H281DRAFT_04319 0.25 -0.4 37,665 - H281DRAFT_04319 0.25 +0.2 37,665 - H281DRAFT_04319 0.25 -0.1 37,665 - H281DRAFT_04319 0.25 -0.4 37,665 - H281DRAFT_04319 0.25 +0.4
Or see this region's nucleotide sequence